PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00055960-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

C2H2

Protein Properties

Length: 379aa MW: 42403.4 Da PI: 8.5572

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00055960-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00078	145	167	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++C++ F++ + L++H ++ H PSME_00055960-RA 145 RCKNCSQQFRSFEALQSHHQSnH 167 7*****************99888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.683	144	168	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	146	167	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.90.228.10	1.6E-13	170	379	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain
SuperFamily	SSF56399	1.53E-20	171	379	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MPTVWLSLRK SLQCRSEDED VHNPESFTVV MAGKKLNSCN SNGFVGNKFI KRMDRFSSHR 60 SRSRDEFMKT FSQELMVIGD YKCQCSAKDA SLLDQNKSNC PCMNNGRNTE RIMPAKCVKQ 120 VLLSPAKFKP GYPSFCNGVD HIRIRCKNCS QQFRSFEALQ SHHQSNHAIT DLSECDLTRR 180 TVERIFKTSW LESGIECTKI ERVIKVNNTQ SKLARFEEYR EAVKCRAGPE EASKHSRCLA 240 DGNEVLRFHG TTIMCSLGTK ESSSLCDKED CNLCKIIRTG FACNGKGIYT TATSGRAHCS 300 INLFNQNAGT KFCGKRAILI CRVIAGRVHG PVDSSDSTSF SSACFDSVAG REDSNCSGLE 360 ELFVFNPRAV LPCFVIVYS

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MPTVWLSLRK SLQCRSEDED VHNPESFTVV MAGKKLNSCN SNGFVGNKFI KRMDRFSSHR  60
SRSRDEFMKT FSQELMVIGD YKCQCSAKDA SLLDQNKSNC PCMNNGRNTE RIMPAKCVKQ  120
VLLSPAKFKP GYPSFCNGVD HIRIRCKNCS QQFRSFEALQ SHHQSNHAIT DLSECDLTRR  180
TVERIFKTSW LESGIECTKI ERVIKVNNTQ SKLARFEEYR EAVKCRAGPE EASKHSRCLA  240
DGNEVLRFHG TTIMCSLGTK ESSSLCDKED CNLCKIIRTG FACNGKGIYT TATSGRAHCS  300
INLFNQNAGT KFCGKRAILI CRVIAGRVHG PVDSSDSTSF SSACFDSVAG REDSNCSGLE  360
ELFVFNPRAV LPCFVIVYS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	3e-63	C2H2 family protein