PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00055860-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | HB-other | ||||||||
Protein Properties | Length: 242aa MW: 27614.4 Da PI: 8.2992 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.7 | 4.1e-08 | 4 | 31 | 30 | 57 |
HHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 30 reeLAkklgLterqVkvWFqNrRakekk 57 r+ L+ +lgL++rq ++WF rR k+kk PSME_00055860-RA 4 RAYLSLQLGLSDRQLQMWFYHRRLKDKK 31 889***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.867 | 1 | 32 | IPR001356 | Homeobox domain |
CDD | cd00086 | 0.00196 | 2 | 26 | No hit | No description |
SuperFamily | SSF46689 | 6.84E-7 | 3 | 33 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.1E-7 | 4 | 34 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.2E-5 | 4 | 31 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MAVRAYLSLQ LGLSDRQLQM WFYHRRLKDK KEKEKEKEKE KEKEKYKEKE KEKEKQPKKE 60 KSKPAPPPAP THSASLMPTS TKTNFYDDYD ARKRPTLKLN SEGGRGWKKK SFESLSTSTG 120 LVSDDILTQL EEATDVANIM EELGYGCTID VSHCKDILSF FSPLKEETVS KIISMVVRTH 180 TGLEDAHGTH STFYTSMFNS SITDSSWLSS WNIDVLLDSF KQLVSVLPFT SSQSLYSVSC 240 IC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 24 | 31 | RRLKDKKE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44180.2 | 4e-07 | Homeodomain-like transcriptional regulator |