PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00055706-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 252aa MW: 27774.2 Da PI: 6.7585 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116.3 | 2e-36 | 7 | 102 | 1 | 94 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C aCk+lrrkC+k+Cv+apyf++e+ +++f ++hk+FGasn +kll +lp ++r da+ s++yeAear++dPvyG+v++i +lqqq++ lk PSME_00055706-RA 7 PCGACKFLRRKCVKGCVFAPYFCSEEmeASHFGAIHKVFGASNFSKLLMQLPVQQRYDAVLSVLYEAEARLQDPVYGCVSHIYALQQQVAYLK 99 7*********************99885469***********************************************************9998 PP DUF260 92 ael 94 +l PSME_00055706-RA 100 GKL 102 766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.998 | 6 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-35 | 7 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MGGEGAPCGA CKFLRRKCVK GCVFAPYFCS EEMEASHFGA IHKVFGASNF SKLLMQLPVQ 60 QRYDAVLSVL YEAEARLQDP VYGCVSHIYA LQQQVAYLKG KLYVGYAQIA ACSSSNGASL 120 NPEYGYDKQL EMPSLISTSN RIRPHDKQYV DSWGDLQHIP SGNVGMNSYN GKTRVDEGSW 180 RSLSECMQGD NSRMSAIHAL STAQEKDIAQ DADRLFEQRT PNNNGRDGDL QDLALALIRR 240 NGSTCVTTEF SG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-38 | 3 | 109 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-38 | 3 | 109 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006411501.1 | 2e-50 | LOB domain-containing protein 17 | ||||
TrEMBL | V4M9C7 | 4e-49 | V4M9C7_EUTSA; Uncharacterized protein | ||||
STRING | XP_006411501.1 | 7e-50 | (Eutrema salsugineum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 5e-51 | lateral organ boundaries-domain 29 |