PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00055491-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB_related

Protein Properties

Length: 388aa MW: 42791.4 Da PI: 6.0425

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00055491-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39	1.8e-12	26	95	2	46
SSS-HHHHHHHHHHHHHTTTT..........................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..........................tWktIartmgkgRtlkqcksrwqk 46 W+ eEde+l+++++ G+ +W++Ia+ + gRt++++k++w + PSME_00055491-RA 26 SFWSREEDEKLANYIRNNGNLggwsyvakqadnghcvndkqldatfgRWSLIAAQLS-GRTDNELKNYWKS 95 56***************99********************************.*********75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.937	20	101	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.3E-15	23	101	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-9	24	99	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.09E-10	25	98	IPR009057	Homeodomain-like
Pfam	PF13921	2.5E-5	28	100	No hit	No description
CDD	cd00167	2.56E-7	28	94	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MRYTQGQGVI SEDIPSTPSK RMLKKSFWSR EEDEKLANYI RNNGNLGGWS YVAKQADNGH 60 CVNDKQLDAT FGRWSLIAAQ LSGRTDNELK NYWKSCIKKK LNLKHNLSAG SSSSQSNFTD 120 TKSHIPTQSN SNLVSVQYAH DVLTSSQSSQ KYLDGIPEGS QAPNKAFNIL NSCKNPLCVQ 180 GVMELKHKQV HDQTDHEFSV DTDLTNGQGI CYPNLWTNAS SIHIHESFSN PAAFISPSLH 240 AKSSTCCSTT LATHETPCFP DISQLGSTGI NIPALIIESD SSKGKLENDE NHITCIDYSN 300 ETDSSDIVDP GAYTSHEENF NDSLNYLSYD INFQGVAAYI DISYLLPPIK EAMKANPFPT 360 LIERRGANGL FETETKCRAG DGQVTTRA

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MRYTQGQGVI SEDIPSTPSK RMLKKSFWSR EEDEKLANYI RNNGNLGGWS YVAKQADNGH  60
CVNDKQLDAT FGRWSLIAAQ LSGRTDNELK NYWKSCIKKK LNLKHNLSAG SSSSQSNFTD  120
TKSHIPTQSN SNLVSVQYAH DVLTSSQSSQ KYLDGIPEGS QAPNKAFNIL NSCKNPLCVQ  180
GVMELKHKQV HDQTDHEFSV DTDLTNGQGI CYPNLWTNAS SIHIHESFSN PAAFISPSLH  240
AKSSTCCSTT LATHETPCFP DISQLGSTGI NIPALIIESD SSKGKLENDE NHITCIDYSN  300
ETDSSDIVDP GAYTSHEENF NDSLNYLSYD INFQGVAAYI DISYLLPPIK EAMKANPFPT  360
LIERRGANGL FETETKCRAG DGQVTTRA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01680.3	3e-17	myb domain protein 55