PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00055440-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HSF
Protein Properties Length: 455aa    MW: 51420 Da    PI: 5.0417
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00055440-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.71.4e-36521442103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y+++ed+ ++ ++sws+++nsfvv+++++f++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll
  PSME_00055440-RA  52 FLTKTYDMVEDPLTDAVVSWSSTNNSFVVWNSHQFSSDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLL 135
                       9****************************************************************999.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       + i+r+k +
  PSME_00055440-RA 136 KLIQRRKPS 144
                       ******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.1E-3948141IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.67E-3448141IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.7E-6148141IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-205275IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.2E-3252141IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-2090102IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434091115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-20103115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
SRIMDSQNSG INVGDDGVNL MNFNVKEEDS MQQTQSCPRP MEGLHSAGPP PFLTKTYDMV  60
EDPLTDAVVS WSSTNNSFVV WNSHQFSSDL LPKYFKHNNF SSFVRQLNTY GFRKVDPDRW  120
EFANEGFLRG QKHLLKLIQR RKPSAPSQFL DILHRPHQQE QQQGTGACVE VGQFGMVGEI  180
EGLRRDKTVL TMEVVKLRQQ QQSTRNQLQN IGHRLQKTEQ RQQHMMTFLA RAIQNPTFLA  240
QLSQNKQASK RLAASKKRRR LPKGEAKQDL QSPTATEDRI VQYQANTSIP ADSDHSQNST  300
NLEAFLSTMG HADSLDMPTR HETFQDEEQD ESISMVAEHL YGLESGSSFD NSMAVGTPLD  360
RNSINLVKAE GEEDLVLKSV NDVFWEELLN EHFDSQDDSG TEEDANFLDQ DKGDSSFSRS  420
DVSLLAEQMG QAAFHQSIPI ISEKCIAIES GFNFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-274314117129Heat shock factor protein 1
5d5v_B1e-274314117129Heat shock factor protein 1
5d5v_D1e-274314117129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256260KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response. {ECO:0000269|PubMed:18064488}.
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0851290.0EF085129.1 Picea sitchensis clone WS02725_C11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314448.11e-101heat shock factor protein HSF8-like
SwissprotQ6F3882e-97HFA2E_ORYSJ; Heat stress transcription factor A-2e
SwissprotQ84T615e-97HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA9NUX60.0A9NUX6_PICSI; Uncharacterized protein
STRINGERN155151e-99(Amborella trichopoda)
STRINGGorai.008G225200.11e-99(Gossypium raimondii)
STRINGXP_010276853.11e-99(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-85heat shock transcription factor A2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]