PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00055350-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 451aa    MW: 49388.9 Da    PI: 5.2448
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00055350-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.81.6e-201480148
                      TSSS-HHHHHHHHHHHHHTTTT....................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg....................tWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd++lvd+++++G g                    +W++Ia++++ gRt++++k++w+++l
  PSME_00055350-RA 14 KGPWTPEEDQKLVDYIQKHGHGswralpknagagpslsdvltRWSAIAAHLP-GRTDNEIKNYWNTHL 80
                      79**************************************************.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-25588IPR009057Homeodomain-like
PROSITE profilePS5129419.469984IPR017930Myb domain
SMARTSM007173.4E-191382IPR001005SANT/Myb domain
PfamPF002495.7E-181480IPR001005SANT/Myb domain
SuperFamilySSF466891.51E-151481IPR009057Homeodomain-like
CDDcd001676.56E-151680No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MGRAPCCDEN GLKKGPWTPE EDQKLVDYIQ KHGHGSWRAL PKNAGAGPSL SDVLTRWSAI  60
AAHLPGRTDN EIKNYWNTHL KKRLLQMGID PMTHRPRTDL FAASQISQYF ASLTQWENAR  120
MEAEARWLRD YLKLAAYRSS PNLLNGAENG NMNQLDINLL RSAAACRFDD PATALGSHLW  180
GAQQQPVSVL ALNSQNMDQH LVQGPNRCSG SYSVPDQSGN VEGLSLHQDQ QGSVTQFLDN  240
MCSLALGCAY SNPNLQLGQG AIAPPSDSCI TDEAARKEIS NVFNGENILK LSENDKMKSY  300
QDDYGHNLMS CTIEGPMINT KAEMSDHNTN FLWPDHKSNS LPALIPASGS PRSNPFSGPS  360
DLGSNESSSS MVNNNNGNYG GSLVPPELLL DFTENSNTAK PIATVGLTSS STQLWSDMNS  420
EDGRDYWSNM LKLVDTIPAG LEHIIRPVQS E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1015432e-97BT101543.1 Picea glauca clone GQ01306_P15 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.16e-49myb domain protein 16