PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00055293-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 325aa MW: 37069.2 Da PI: 8.194 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 97.4 | 2.2e-30 | 5 | 82 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 +e+ewyfF++rd+ky++g r+nra++sgyWkatg dk++l++ ++++vg+kk Lvfy gr pkg kt+W+mheyrl PSME_00055293-RA 5 GEQEWYFFIPRDRKYPNGARPNRAATSGYWKATGMDKPILTStsgGTQKVGVKKALVFYGGRPPKGIKTNWIMHEYRL 82 679*************************************998888899***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 38.645 | 1 | 132 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.71E-34 | 3 | 92 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-14 | 8 | 82 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.71E-34 | 120 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
KATFGEQEWY FFIPRDRKYP NGARPNRAAT SGYWKATGMD KPILTSTSGG TQKVGVKKAL 60 VFYGGRPPKG IKTNWIMHEY RLADSGSMPS NFPNKKGSLR ESIRFNYNWY IDFDDTAVLQ 120 LDYWVLCRIY KKKGHSQRVQ GAERDESPSA DEVMTSLPNI EQQNKLQLPK LVPFSGLLET 180 NDPFIEGLLN DEAMDGNGNI SRLPHQVHSS DLSHNNFSNS NDNNSDCQFE VVPKQEALAV 240 DNENKFNSLK RTLSLAAFGD EEIHSAKRFN NMQNNYSYNV NNNVSSLLNS MQPNQTFQQQ 300 NFLSALSDNQ QNFRLPYIQN MHWSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-40 | 1 | 138 | 65 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-40 | 1 | 138 | 65 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-40 | 1 | 138 | 65 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-40 | 1 | 138 | 65 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-40 | 1 | 138 | 68 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-40 | 1 | 138 | 68 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-40 | 1 | 138 | 68 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-40 | 1 | 138 | 68 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-40 | 1 | 138 | 68 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-40 | 1 | 138 | 68 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-40 | 1 | 138 | 68 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-40 | 1 | 138 | 68 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-40 | 1 | 138 | 65 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-40 | 1 | 138 | 65 | 171 | NAC domain-containing protein 19 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT111167 | 1e-173 | BT111167.1 Picea glauca clone GQ03233_M04 mRNA sequence. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 5e-51 | NAC domain containing protein 2 |