PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00055202-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 268aa    MW: 29218.9 Da    PI: 5.4448
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00055202-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like37.84.2e-12232256125
           G2-like   1 kprlrWtpeLHerFveaveqLGGse 25 
                       kprlrWtpeLHe+Fvea+++LGG+e
  PSME_00055202-RA 232 KPRLRWTPELHENFVEAINKLGGAE 256
                       79*********************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-10229257IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-7232257IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
TEHSWNACFI ENNVPPSQHI LPQVLSPDSG QANSFRTLSS VSSVSNAGIG HGHMYSSASS  60
FCTSLHCSSS TGSQRQNQLS GLPFLPQPSK PLLQGSAVRS SQSGLSYNSE VRNLRCHDVG  120
TDHPLQEFFN FPEELSEYSQ RSHEKPANTP NVGQEQSKQS DWPAWTEHMV SDDLSDLLVG  180
DPCLNTTFQT PKSSTTESTL HQLQSHQQFL PSSEAIHLPA NSPASGAGAS SKPRLRWTPE  240
LHENFVEAIN KLGGAESEQS TTEMSLEF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0858010.0EF085801.1 Picea sitchensis clone WS02727_L10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LPK91e-148B8LPK9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-08G2-like family protein