PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00055202-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | G2-like | ||||||||
Protein Properties | Length: 268aa MW: 29218.9 Da PI: 5.4448 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 37.8 | 4.2e-12 | 232 | 256 | 1 | 25 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 kprlrWtpeLHe+Fvea+++LGG+e PSME_00055202-RA 232 KPRLRWTPELHENFVEAINKLGGAE 256 79*********************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-10 | 229 | 257 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-7 | 232 | 257 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
TEHSWNACFI ENNVPPSQHI LPQVLSPDSG QANSFRTLSS VSSVSNAGIG HGHMYSSASS 60 FCTSLHCSSS TGSQRQNQLS GLPFLPQPSK PLLQGSAVRS SQSGLSYNSE VRNLRCHDVG 120 TDHPLQEFFN FPEELSEYSQ RSHEKPANTP NVGQEQSKQS DWPAWTEHMV SDDLSDLLVG 180 DPCLNTTFQT PKSSTTESTL HQLQSHQQFL PSSEAIHLPA NSPASGAGAS SKPRLRWTPE 240 LHENFVEAIN KLGGAESEQS TTEMSLEF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF085801 | 0.0 | EF085801.1 Picea sitchensis clone WS02727_L10 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LPK9 | 1e-148 | B8LPK9_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 1e-08 | G2-like family protein |