PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00055094-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 194aa    MW: 21981.5 Da    PI: 10.3037
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00055094-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1691.6e-52361622128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                       ppGfrF Ptdeelvv+yL+kk++++ +++  +i+evd+yk++Pw+Lp k+  +ekewyfF++rd+ky++g+r++ra+ sgyWkatg dk++ +
  PSME_00055094-RA  36 PPGFRFFPTDEELVVHYLCKKAASQIIPV-PIIAEVDLYKYDPWQLPDKALFGEKEWYFFTPRDRKYPNGSRRKRAAGSGYWKATGADKPINA 127
                       9****************************.88***************8777899*************************************** PP

               NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k +++ vg+kk Lvfy g+apkg+kt+W+mheyrl
  PSME_00055094-RA 128 KgGKKRVGIKKALVFYAGKAPKGSKTNWIMHEYRL 162
                       966777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-5829164IPR003441NAC domain
PROSITE profilePS5100554.00335187IPR003441NAC domain
PfamPF023651.3E-2736162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MGGIKGLGTI RVAIHLEELC KQARDHCALI VHNQWPPGFR FFPTDEELVV HYLCKKAASQ  60
IIPVPIIAEV DLYKYDPWQL PDKALFGEKE WYFFTPRDRK YPNGSRRKRA AGSGYWKATG  120
ADKPINAKGG KKRVGIKKAL VFYAGKAPKG SKTNWIMHEY RLADVSRPGR KKGSLRVSWS  180
ISSLLCFESE DLTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-703617718154NO APICAL MERISTEM PROTEIN
1ut4_B8e-703617718154NO APICAL MERISTEM PROTEIN
1ut7_A8e-703617718154NO APICAL MERISTEM PROTEIN
1ut7_B8e-703617718154NO APICAL MERISTEM PROTEIN
3swm_A8e-703617821158NAC domain-containing protein 19
3swm_B8e-703617821158NAC domain-containing protein 19
3swm_C8e-703617821158NAC domain-containing protein 19
3swm_D8e-703617821158NAC domain-containing protein 19
3swp_A8e-703617821158NAC domain-containing protein 19
3swp_B8e-703617821158NAC domain-containing protein 19
3swp_C8e-703617821158NAC domain-containing protein 19
3swp_D8e-703617821158NAC domain-containing protein 19
3ulx_A8e-703616216140Stress-induced transcription factor NAC1
4dul_A8e-703617718154NAC domain-containing protein 19
4dul_B8e-703617718154NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792530.12e-79NAC domain-containing protein 2-like isoform X1
RefseqXP_020102207.18e-80NAC domain-containing protein 68-like
SwissprotQ52QH43e-77NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A0D6R3P98e-91A0A0D6R3P9_ARACU; Uncharacterized protein
STRINGXP_008792530.19e-79(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.12e-78NAC domain containing protein 32
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]