PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00055072-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 263aa    MW: 28843.9 Da    PI: 8.2168
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00055072-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26087.12.4e-274100192
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C+++C+l+p++     +++q++++ +++k++G++ +++ll++ pe+ r+++++sl+y A+ r+ +Pv+G++g+++++++  +
  PSME_00055072-RA   4 SCNGCRVLRKGCSESCILRPCLqwirtAESQANATIFLAKFYGRAGLMNLLNNGPEHLRPAIFKSLLYDACGRMVNPVHGSLGLLWSGNWAKC 96 
                       6*********************9999778899**********************************************************999 PP

            DUF260  89 qlka 92 
                       q+ +
  PSME_00055072-RA  97 QAGV 100
                       9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.9353109IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-22498IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSESCI LRPCLQWIRT AESQANATIF LAKFYGRAGL MNLLNNGPEH  60
LRPAIFKSLL YDACGRMVNP VHGSLGLLWS GNWAKCQAGV DSILRGSFSE VTQTNFLCAD  120
HHKNIVPMEA MAVGELLRSV KGRDRLESLP LPHAKHKRKV GQCARMNSPI QSSNISDDGI  180
DVTSTVQKAA DNGKSKVDKY SSFFSTQEQD GFVAVDQEQS MEYFSDLCNI KTSQPEAACD  240
TVVLELTLGS QGSTSHTHKL SVV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.13e-65LOB domain-containing protein 40