PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00055048-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 194aa    MW: 22007.7 Da    PI: 10.1722
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00055048-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.51.5e-50361622128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                       ppGf+F Pt eelvv+yL+kk +++ +++  +i+evd+yk++Pw+Lp k++ +ekewyfF+++d+ky++g+r++rat sgyWkatg dk++ +
  PSME_00055048-RA  36 PPGFKFFPTYEELVVHYLCKKEASQIIPV-PIIAEVDLYKYDPWQLPDKAQFGEKEWYFFTPHDRKYPNGSRPKRATGSGYWKATGVDKPINV 127
                       9****************************.88***************99999***************************************** PP

               NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k +++ vg+kk Lvfy g+apkg+kt+W+mheyrl
  PSME_00055048-RA 128 KgGKKRVGIKKALVFYVGKAPKGSKTNWIMHEYRL 162
                       966777***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-5530164IPR003441NAC domain
PROSITE profilePS5100551.48335187IPR003441NAC domain
PfamPF023658.5E-2536162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MGGIKGLGTI RVAIHLEELC KQAIDHCALL VHNQWPPGFK FFPTYEELVV HYLCKKEASQ  60
IIPVPIIAEV DLYKYDPWQL PDKAQFGEKE WYFFTPHDRK YPNGSRPKRA TGSGYWKATG  120
VDKPINVKGG KKRVGIKKAL VFYVGKAPKG SKTNWIMHEY RLADVSRPAR KKGSLRVSWS  180
ISSLLCFESA VLTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-67231785155NO APICAL MERISTEM PROTEIN
1ut4_B2e-67231785155NO APICAL MERISTEM PROTEIN
1ut7_A2e-67231785155NO APICAL MERISTEM PROTEIN
1ut7_B2e-67231785155NO APICAL MERISTEM PROTEIN
3swm_A2e-67231788158NAC domain-containing protein 19
3swm_B2e-67231788158NAC domain-containing protein 19
3swm_C2e-67231788158NAC domain-containing protein 19
3swm_D2e-67231788158NAC domain-containing protein 19
3swp_A2e-67231788158NAC domain-containing protein 19
3swp_B2e-67231788158NAC domain-containing protein 19
3swp_C2e-67231788158NAC domain-containing protein 19
3swp_D2e-67231788158NAC domain-containing protein 19
4dul_A2e-67231785155NAC domain-containing protein 19
4dul_B2e-67231785155NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
UniProtTranscriptional activator that positively regulates age-dependent senescence, dark-induced leaf senescence and stress-induced senescence. Regulates leaf senescence through the modulation of the expression of senescence-associated genes SGR1/NYE1, SAG113 and SAUR36/SAG201, which are involved in chlorophyll degradation, and abscisic acid (ABA) and auxin promotion of senescence, respectively. Promotes reactive oxygen species (ROS) production during age-dependent and stress-induced senescence. Regulates positively auxin-mediated responses in roots (PubMed:27388337). Stress-responsive NAC transcription factor involved in ABA-inducible leaf senescence signaling (PubMed:26518251). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:26518251, ECO:0000269|PubMed:27388337}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) (PubMed:26518251). Induced by salinity and osmotic stress, and during leaf senescence (PubMed:27388337). {ECO:0000269|PubMed:26518251, ECO:0000269|PubMed:27388337}.
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792530.12e-75NAC domain-containing protein 2-like isoform X1
RefseqXP_009394855.11e-75PREDICTED: NAC domain-containing protein 68-like
SwissprotQ52QH42e-72NAC68_ORYSJ; NAC domain-containing protein 68
SwissprotQ9CAR01e-72NAC32_ARATH; NAC transcription factor 32
TrEMBLA0A0D6R3P91e-85A0A0D6R3P9_ARACU; Uncharacterized protein
STRINGXP_008792530.17e-75(Phoenix dactylifera)
STRINGGSMUA_Achr4P02390_0016e-75(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.15e-69NAC domain containing protein 32
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  7. Vermeirssen V,De Clercq I,Van Parys T,Van Breusegem F,Van de Peer Y
    Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress.
    Plant Cell, 2014. 26(12): p. 4656-79
    [PMID:25549671]
  8. Takasaki H, et al.
    SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence.
    Plant J., 2015. 84(6): p. 1114-23
    [PMID:26518251]
  9. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]
  10. Mahmood K,El-Kereamy A,Kim SH,Nambara E,Rothstein SJ
    ANAC032 Positively Regulates Age-Dependent and Stress-Induced Senescence in Arabidopsis thaliana.
    Plant Cell Physiol., 2016. 57(10): p. 2029-2046
    [PMID:27388337]
  11. Allu AD,Brotman Y,Xue GP,Balazadeh S
    Transcription factor ANAC032 modulates JA/SA signalling in response to Pseudomonas syringae infection.
    EMBO Rep., 2016. 17(11): p. 1578-1589
    [PMID:27632992]
  12. Mahmood K,Xu Z,El-Kereamy A,Casaretto JA,Rothstein SJ
    The Arabidopsis Transcription Factor ANAC032 Represses Anthocyanin Biosynthesis in Response to High Sucrose and Oxidative and Abiotic Stresses.
    Front Plant Sci, 2016. 7: p. 1548
    [PMID:27790239]
  13. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]