PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00054965-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 259aa MW: 28366.3 Da PI: 8.2109 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 85.9 | 5.7e-27 | 4 | 103 | 1 | 95 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C+++Cvl+p++ +++q+++ ++ k++G++ +++l+++ pe+ r+++++sl+y A+ r+ +P+yG+vg++ ++++ l+ PSME_00054965-RA 4 SCNGCRVLRKGCSDSCVLRPCLewirtAESQANAIVFLVKFYGRAGLTNLISNGPEHLRPAIFRSLLYDACGRMVNPIYGSVGLLCSGNWALC 96 6*********************9999778899************************************************************9 PP DUF260 89 qlkaela 95 ++ e + PSME_00054965-RA 97 EAGLESV 103 9876655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.69 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.9E-22 | 4 | 99 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSDSCV LRPCLEWIRT AESQANAIVF LVKFYGRAGL TNLISNGPEH 60 LRPAIFRSLL YDACGRMVNP IYGSVGLLCS GNWALCEAGL ESVLQGSFST DTQGNFPSHI 120 VPVRAMAIRK LYRSVKARGR FKGFTHSKPR QKEHDHALVY SDMDSGSKSD DLGNVTNTLQ 180 KAADNSKFNE KCVEKYSTFL SGKELDEFVA THQAQIESFH DLCNVGSSIQ TEGSVCNAVG 240 LELTLGSQSF TSPVTPPLQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67100.1 | 1e-60 | LOB domain-containing protein 40 |