PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00054858-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 261aa    MW: 28503.3 Da    PI: 8.4141
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00054858-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.78.6e-29298192
            DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90
                      +C+aC+vlr++C+++Cvl+p++     +++q++++ +++k++G+  +++l+++ pe+ r+++++sl+yeA+ r+ +PvyG+vg+++++++  +q+
  PSME_00054858-RA  2 SCNACRVLRKGCSESCVLRPCLhwistAESQANATIFLAKFYGRVGLTNLISNGPEHLRPAIFRSLLYEACGRMVNPVYGSVGLVWSGNWAECQA 96
                      6*********************9999778899**********************************************************99987 PP

            DUF260 91 ka 92
                       +
  PSME_00054858-RA 97 GV 98
                      65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.7081107IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-23296IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MSCNACRVLR KGCSESCVLR PCLHWISTAE SQANATIFLA KFYGRVGLTN LISNGPEHLR  60
PAIFRSLLYE ACGRMVNPVY GSVGLVWSGN WAECQAGVDS ILRGSFCAVS QGNFMSPVRE  120
DTAPMQAMAI PQLRRSVKAR RRLKGLSHAK HERKEGKRVP ISNPIQFNSI SDNQGDVTKA  180
IQNGADNSKF NEKRKEKYSA LFSGQEQDEF VSAGDSQMEH CYAMCDLKTS DEPEAASNTV  240
GLELTLGSQG STSTADKLSA L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.11e-60LOB domain-containing protein 40