PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00054826-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 159aa    MW: 17982.1 Da    PI: 9.2612
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00054826-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.9e-161159254
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                      +y+GVr+++ +gr++AeI+dp++   + + +lg+++taeeAa a++ a++++ 
  PSME_00054826-RA 11 RYRGVRRRP-WGRFAAEICDPKT---KEQRWLGTYDTAEEAACAYDFAARAMS 59
                      69*******.**********954...5999****************9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-191168IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-261167IPR001471AP2/ERF domain
CDDcd000182.47E-251167No hitNo description
PROSITE profilePS5103220.5471168IPR001471AP2/ERF domain
SMARTSM003802.0E-291174IPR001471AP2/ERF domain
PfamPF008471.5E-101160IPR001471AP2/ERF domain
PRINTSPR003674.8E-91223IPR001471AP2/ERF domain
PRINTSPR003674.8E-93450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MKLERGKEAG RYRGVRRRPW GRFAAEICDP KTKEQRWLGT YDTAEEAACA YDFAARAMSG  60
IKALTNFIYL NSEHCMLSTP TPPASFTGST FPTNIKDSFS HKPQKLQDSW LDCLWRDSST  120
TRPGPCDEAK QQQQKQQFSV NGGYNMLGST VSSWRPSNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-19667971Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085880.13e-29ethylene-responsive transcription factor ESR2
TrEMBLA0A067JS366e-28A0A067JS36_JATCU; Uncharacterized protein
TrEMBLS8DJJ74e-28S8DJJ7_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_010249428.12e-28(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.17e-10ERF family protein