PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00054800-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 238aa MW: 25945.7 Da PI: 6.5002 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 118.4 | 4.1e-37 | 7 | 104 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C aCk+lrrkC+k+Cv+apyf++e+ + +f ++hk+FGasn +kll +lp ++r da+ s++yeAear++dPvyG+v++i +lqqq+++lk PSME_00054800-RA 7 PCGACKFLRRKCVKGCVFAPYFCSEEmgATHFGAIHKVFGASNFSKLLMHLPVHQRFDAVVSVLYEAEARLQDPVYGCVSHIYALQQQVAHLK 99 7***********************995569*************************************************************99 PP DUF260 92 aelal 96 +la+ PSME_00054800-RA 100 GNLAV 104 88875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.045 | 6 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.2E-36 | 7 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MSSGGAPCGA CKFLRRKCVK GCVFAPYFCS EEMGATHFGA IHKVFGASNF SKLLMHLPVH 60 QRFDAVVSVL YEAEARLQDP VYGCVSHIYA LQQQVAHLKG NLAVGYAQLA DSSSSDGASL 120 GPKYGYGNQS ETPPLMSNSN SSNSYDKQYL NRRENLQQIP SDNIAINNSN EEPREDERSW 180 SNFSVCAQEG IHPRSTAQEA DVLQDADTLS GQRHPNDSGQ GGDLQDLVSA LLRRNRSA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-38 | 4 | 109 | 8 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-38 | 4 | 109 | 8 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020085396.1 | 6e-53 | LOB domain-containing protein 29-like | ||||
Refseq | XP_021629218.1 | 5e-53 | LOB domain-containing protein 29-like | ||||
Swissprot | Q9M2J7 | 5e-50 | LBD29_ARATH; LOB domain-containing protein 29 | ||||
TrEMBL | A0A199VG68 | 4e-51 | A0A199VG68_ANACO; LOB domain-containing protein 29 (Fragment) | ||||
TrEMBL | A0A251JLS2 | 1e-51 | A0A251JLS2_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_032309m | 7e-53 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 4e-49 | lateral organ boundaries-domain 29 |
Publications ? help Back to Top | |||
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