PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00054766-RA | ||||||||
Common Name | C3HDZ2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | HB-other | ||||||||
Protein Properties | Length: 122aa MW: 14592.9 Da PI: 10.1098 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 51.9 | 1.3e-16 | 17 | 75 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++ +++p +r++ +++ +++ +q+kvWFqNrR +ek+ PSME_00054766-RA 17 KYVRYTAEQVEALERLYNDCPKPISLRRQQHIRECpilsHIEPKQIKVWFQNRRCREKQ 75 5678*****************************************************97 PP | |||||||
2 | bZIP_1 | 23.6 | 1.1e-07 | 69 | 112 | 18 | 61 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 rr+R++ +e +L++ +L+a Nk L +e+++l+k+v++l PSME_00054766-RA 69 RRCREKQHKEASRLQTVNMKLTAMNKLLMEENDRLQKQVSQLVY 112 9***************************************9965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 13.378 | 12 | 76 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.1E-9 | 14 | 80 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.97E-9 | 17 | 77 | No hit | No description |
SuperFamily | SSF46689 | 3.29E-13 | 17 | 79 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 7.8E-14 | 18 | 75 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-16 | 19 | 72 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.20.5.170 | 3.4E-4 | 73 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MTVTVVTAQS RAMEAGKYVR YTAEQVEALE RLYNDCPKPI SLRRQQHIRE CPILSHIEPK 60 QIKVWFQNRR CREKQHKEAS RLQTVNMKLT AMNKLLMEEN DRLQKQVSQL VYENGYFRQQ 120 IQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ385529 | 0.0 | DQ385529.1 Pseudotsuga menziesii class III homeodomain-leucine zipper protein C3HDZ2 (C3HDZ2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009378434.1 | 2e-66 | PREDICTED: homeobox-leucine zipper protein ATHB-15-like, partial | ||||
Swissprot | Q39123 | 4e-62 | ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8 | ||||
TrEMBL | Q20BK6 | 1e-73 | Q20BK6_PSEMZ; Class III homeodomain-leucine zipper protein C3HDZ2 | ||||
STRING | XP_009378434.1 | 7e-66 | (Pyrus x bretschneideri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32880.1 | 2e-64 | homeobox gene 8 |