PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00054703-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 229aa MW: 25156.9 Da PI: 6.2243 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.6 | 7.3e-37 | 7 | 104 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C aCk+lrrkC+k+Cv+apyf++++ + +f ++hk+FGasn +kll +lp e+r++a+ s++yeAe r++dPvyG+v++i +lqqq+++lk PSME_00054703-RA 7 PCGACKFLRRKCVKGCVFAPYFCSDEmgAPRFGAIHKVFGASNFSKLLMHLPVEHRDNAVVSVLYEAETRLQDPVYGCVSHIYALQQQVANLK 99 7***********************995569**************************************************************9 PP DUF260 92 aelal 96 +la+ PSME_00054703-RA 100 GKLAA 104 99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.998 | 6 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-35 | 7 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MGGGGAPCGA CKFLRRKCVK GCVFAPYFCS DEMGAPRFGA IHKVFGASNF SKLLMHLPVE 60 HRDNAVVSVL YEAETRLQDP VYGCVSHIYA LQQQVANLKG KLAAGYAQLA DCSHSDASSL 120 NRAHDQYDQQ SEMPSLTSNS NSSSPSPSDE HYLNAWGVPQ QIPLDNVAIN NYNEEAGNDK 180 GLRSTHPVST AQETHVFQNG ERFSEQRQLD NNENGDLEDL VLAILRRNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-36 | 3 | 109 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-36 | 3 | 109 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 4e-49 | LBD family protein |