PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00054696-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | ERF | ||||||||
Protein Properties | Length: 232aa MW: 26260.7 Da PI: 8.7357 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27 | 1.1e-08 | 4 | 43 | 9 | 52 |
AP2 9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 ++ +gr++AeI+dp++ + r +lg+++taeeA ++ a+++ PSME_00054696-RA 4 RP-WGRFAAEICDPKT---KERRWLGTYDTAEEAPCTYDFAARA 43 56.**********954...4999***********7777766665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 15.382 | 1 | 54 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-15 | 2 | 60 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.18E-19 | 2 | 53 | No hit | No description |
SuperFamily | SSF54171 | 2.42E-13 | 3 | 54 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-19 | 3 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MVKRPWGRFA AEICDPKTKE RRWLGTYDTA EEAPCTYDFA ARAMSRIKAR TNFIYLNSEH 60 CMLSTPTPPE SLTGSTFPTN IKDPFSHKPQ KLQDSWLDCL WRDSSTTRPR PCDEAKQWQQ 120 KQQFSVNGGY NMLGRTVSSW RPSNNEIENN NNQLLAGAGS SSVVPVSLPR DQHSINASTW 180 QSLPLADPLL LSLSINTIYH TQTLSFHPQF LHPPFVPQLQ KSLIISLPST TI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 1e-23 | DORNROSCHEN-like |