PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00054542-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

HSF

Protein Properties

Length: 516aa MW: 57221.4 Da PI: 4.369

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00054542-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	115.1	4.6e-36	16	107	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl+k+y++++d+++ +++sws+ +nsf+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll PSME_00054542-RA 16 FLTKTYDMVDDPATASIVSWSSGNNSFIVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLL 99 9**************************************************************999.........************ PP XXXXXXXX CS HSF_DNA-bind 95 ekikrkks 102 ++i r+k PSME_00054542-RA 100 KNIYRRKP 107 ***986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	4.5E-40	6	100	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	6.53E-36	12	105	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.1E-63	12	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.7E-31	16	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.8E-19	16	39	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.8E-19	54	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	55	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.8E-19	67	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MDGSQTSSTS NAPPPFLTKT YDMVDDPATA SIVSWSSGNN SFIVWNPPEF ARDLLPKYFK 60 HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG FLRGQKHLLK NIYRRKPTHS HTQPQQQQGQ 120 SASVSACVEV GKFGLEEEIE RLKRDKNVLM TELVRLRQQQ QSTDIQLQTV SQRLQGMEQR 180 QQQMMSFLAK AMQNPGFLAQ LVQQNENNMR LAATNKKRRL PKQEENSQDG QQVPPDGQIV 240 KYQPALNDAA KALFMQIFNT ETSNKLEPST NGLDNFLDVG CSTSEAIDNG NGSSIGRQSG 300 VTLTEMHGTS AFSDACVSSD ISDFQASSTL SEMHCSAGLP EIAASSGFPE MVVSSGLEDM 360 HSFSNLAESM VTSTDIPTSQ LELPEMQSIV TVNHNGRLPS EDYMQPKMLR QDVNAEPMAM 420 DMGLVIDGDR FSSEGDGDIM LDGEDMLPEI NDVFWEQFLA GSASPGGTEE AESVVQESLT 480 KDQDEKASEN GNWSNKKQNM DDLTEQMGQL ASESNP

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MDGSQTSSTS NAPPPFLTKT YDMVDDPATA SIVSWSSGNN SFIVWNPPEF ARDLLPKYFK  60
HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG FLRGQKHLLK NIYRRKPTHS HTQPQQQQGQ  120
SASVSACVEV GKFGLEEEIE RLKRDKNVLM TELVRLRQQQ QSTDIQLQTV SQRLQGMEQR  180
QQQMMSFLAK AMQNPGFLAQ LVQQNENNMR LAATNKKRRL PKQEENSQDG QQVPPDGQIV  240
KYQPALNDAA KALFMQIFNT ETSNKLEPST NGLDNFLDVG CSTSEAIDNG NGSSIGRQSG  300
VTLTEMHGTS AFSDACVSSD ISDFQASSTL SEMHCSAGLP EIAASSGFPE MVVSSGLEDM  360
HSFSNLAESM VTSTDIPTSQ LELPEMQSIV TVNHNGRLPS EDYMQPKMLR QDVNAEPMAM  420
DMGLVIDGDR FSSEGDGDIM LDGEDMLPEI NDVFWEQFLA GSASPGGTEE AESVVQESLT  480
KDQDEKASEN GNWSNKKQNM DDLTEQMGQL ASESNP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	3e-26	3	105	17	129	Heat shock factor protein 1
5d5v_B	3e-26	3	105	17	129	Heat shock factor protein 1
5d5v_D	3e-26	3	105	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00514	DAP	Transfer from AT5G16820	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT113175	0.0	BT113175.1 Picea glauca clone GQ03326_L15 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006854048.2	0.0	heat stress transcription factor A-1 isoform X1
Swissprot	Q84T61	1e-158	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	U5CZX6	0.0	U5CZX6_AMBTC; Uncharacterized protein
STRING	ERN15515	0.0	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-118	heat shock factor 3

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]