PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00054448-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 251aa    MW: 28012.4 Da    PI: 6.4965
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00054448-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.48.6e-377104196
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                       +C aCk+lrrkC+++Cv+apyf++e+  + +f ++hk+FGasn +kll +lp ++r da+ s++yeAear++dPvyG++++i +lqqq+++lk
  PSME_00054448-RA   7 PCGACKFLRRKCVQGCVFAPYFCSEEmgAPHFGAIHKVFGASNFSKLLMHLPVQQRYDAVVSVLYEAEARLQDPVYGCISHIYALQQQVANLK 99 
                       7***********************995569**************************************************************9 PP

            DUF260  92 aelal 96 
                        +l++
  PSME_00054448-RA 100 GKLSA 104
                       98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.2156109IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-357103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGGGREPCGA CKFLRRKCVQ GCVFAPYFCS EEMGAPHFGA IHKVFGASNF SKLLMHLPVQ  60
QRYDAVVSVL YEAEARLQDP VYGCISHIYA LQQQVANLKG KLSAGYAQIA ACSSSNRVSL  120
SPEFEYGKQW EMSSFISNSD STTPYDKQYV NPWGDVQHIP SNNVGMGNYN GKAMEDRGSW  180
SCFSEFIQSD NRMITIDALS TAQGTDVVQN NERISEQRHP SNNNRDGDLQ DLVLAIFRRN  240
RSTCVAPEFY E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-3631097111LOB family transfactor Ramosa2.1
5ly0_B4e-3631097111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398033.17e-52PREDICTED: LOB domain-containing protein 29
RefseqXP_020259516.12e-52LOB domain-containing protein 29-like
TrEMBLM0SRY02e-50M0SRY0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P25190_0013e-51(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.19e-50lateral organ boundaries-domain 29