PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00054445-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 301aa MW: 33956.6 Da PI: 6.9621

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00054445-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	65.5	1.5e-20	2	58	75	128
NAM 75 nratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 +ra++sgyWkatg+dk++l++ ++++vg+kk Lvfy gr pkg kt+W+mheyrl PSME_00054445-RA 2 KRAATSGYWKATGTDKPILTStsgGTQKVGVKKALVFYGGRPPKGIKTNWIMHEYRL 58 799999***********998888899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	29.931	1	108	IPR003441	NAC domain
Pfam	PF02365	9.4E-10	2	58	IPR003441	NAC domain
SuperFamily	SSF101941	8.63E-24	2	68	IPR003441	NAC domain
SuperFamily	SSF101941	8.63E-24	96	108	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
PKRAATSGYW KATGTDKPIL TSTSGGTQKV GVKKALVFYG GRPPKGIKTN WIMHEYRLAD 60 SGARPSSFPN KKGSLRESIH FNYNWYIDFD DTAVLQLDDW VLCRIYKKNG HSQRVQGAER 120 DESLSADEVM TSLPNIEQQN KLQLPKLGPF SGLLETDDPF IEGLLNDEAM DGNGNISRLP 180 HQVHSSDLSH NNFSNSNNNN SDCQFEVVPK QEALAVDNEN KFNSLKRTLS LATFGDEEIH 240 SAKRFNDMQN NYSYNVNNNV SALLNSMQPN QTFQQKNFLS ALSDSQQNFR LPYIQNMHWS 300 S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-25	1	114	89	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-25	1	114	89	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-25	1	114	89	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-25	1	114	89	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-25	1	114	92	174	NAC domain-containing protein 19
3swm_B	2e-25	1	114	92	174	NAC domain-containing protein 19
3swm_C	2e-25	1	114	92	174	NAC domain-containing protein 19
3swm_D	2e-25	1	114	92	174	NAC domain-containing protein 19
3swp_A	2e-25	1	114	92	174	NAC domain-containing protein 19
3swp_B	2e-25	1	114	92	174	NAC domain-containing protein 19
3swp_C	2e-25	1	114	92	174	NAC domain-containing protein 19
3swp_D	2e-25	1	114	92	174	NAC domain-containing protein 19
4dul_A	2e-25	1	114	89	171	NAC domain-containing protein 19
4dul_B	2e-25	1	114	89	171	NAC domain-containing protein 19

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT111167	1e-165	BT111167.1 Picea glauca clone GQ03233_M04 mRNA sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	1e-35	NAC domain containing protein 25