PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00054400-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 183aa MW: 20093.5 Da PI: 5.497 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.3 | 4.1e-41 | 13 | 113 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+C ++Cvlapyfp ++p+kfa vh++FGasn++++l+++ e+r+da+ss+vyeA+a +rdPvyG++gv+ lqqq++ l+++ PSME_00054400-RA 13 PCAACKTLRRRCGDECVLAPYFPPDDPHKFATVHRVFGASNIIRILQDVASEHRDDAVSSMVYEARATLRDPVYGCAGVVCLLQQQVSDLQSQ 105 7******************************************************************************************** PP DUF260 94 lallkeel 101 la +++++ PSME_00054400-RA 106 LAIAQAQI 113 ***99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.038 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.5E-41 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MSEGNGRTRV ATPCAACKTL RRRCGDECVL APYFPPDDPH KFATVHRVFG ASNIIRILQD 60 VASEHRDDAV SSMVYEARAT LRDPVYGCAG VVCLLQQQVS DLQSQLAIAQ AQIFNLHCQQ 120 TNLLAFLRAS NSSFGIGGET GDYHDYDEPL GSSWTDSPGS QVIDGENHVL LQEMFLQCSH 180 YGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-39 | 13 | 118 | 11 | 116 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-39 | 13 | 118 | 11 | 116 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022875086.1 | 9e-58 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 7e-51 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A2Z7BKX0 | 1e-56 | A0A2Z7BKX0_9LAMI; LOB domain-containing protein 11-like | ||||
STRING | Solyc11g072470.1.1 | 7e-57 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-42 | LOB domain-containing protein 1 |