PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00054346-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family TCP
Protein Properties Length: 537aa    MW: 58712.5 Da    PI: 8.8595
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00054346-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP94.62e-29802713135
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............................. 65 
                       g kdrhsk+ T++g+RdRRvRls ++a++++dLqd+L +d++s +++WL+++ak ai+el+ +                              
  PSME_00054346-RA  80 GCKDRHSKVRTAKGLRDRRVRLSGPTAIQLYDLQDRLCLDQPSMAVDWLIKAAKSAIDELNVLdaemasayagnlaqltssncsnvehcvgsp 172
                       669************************************************************777777777777555544443333333333 PP

               TCP  66 ...ssssaseceaesssssasnsssg...............................................kaaksaa.kskksqksaasa 107
                                                +                                               + ++s+   + ++++ +++ 
  PSME_00054346-RA 173 resA---------------------TaaaasgltafrvglsspkaletdsqnaisgkaisitnmkesdlgrssS-STSDDsIKGSAEHTSNCS 243
                       3330.....................1334444455666666666666666666677777788999999998844.444444777888888888 PP

               TCP 108 lnlakesrakarararertrekmriknk 135
                        ++ + sr +ar++arer r+k +  ++
  PSME_00054346-RA 244 MSKPAASRREARSKARERARKKSASAQS 271
                       888889**************99987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.5E-3280266IPR005333Transcription factor, TCP
PROSITE profilePS5136928.62781139IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MLSNNTLEDL PAGFMRVNTK EPEDYSDGRP NIDNIKMQFN GKGSKRKVGE MERKAAAVEI  60
QSRKKIEQDS RIVRLSRLTG CKDRHSKVRT AKGLRDRRVR LSGPTAIQLY DLQDRLCLDQ  120
PSMAVDWLIK AAKSAIDELN VLDAEMASAY AGNLAQLTSS NCSNVEHCVG SPRESATAAA  180
ASGLTAFRVG LSSPKALETD SQNAISGKAI SITNMKESDL GRSSSSTSDD SIKGSAEHTS  240
NCSMSKPAAS RREARSKARE RARKKSASAQ SPTESPRAIR QLNSMQSSLT SLFKSSFPYP  300
KLPMESPCHK DDNRCGIQTQ VLSGIDSVQQ LWGYNNMPSY TDMSCTQESH PLQNMPSYST  360
AGLQKSLPAL PNSSVSIQAV TGSSCLQSYE TPDSPISFFH PKEIRHMGGN GAQGQANLCY  420
SNTPNLIMKS AEQQQAQMHI RHFGSTFVPT FSNDIHFSTS SLSGRGPLQS NSSCITNMPS  480
LSHTQNNAYG EASAKAAHDS SSLRDYDARV YQEFCNAQDN VKYGHNIQLW SKEKEHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1786139154Putative transcription factor PCF6
5zkt_B3e-1786139154Putative transcription factor PCF6
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.17e-29plastid transcription factor 1