PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00054308-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 239aa MW: 26349.3 Da PI: 6.2232 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 119.9 | 1.4e-37 | 7 | 104 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C aCk+lrrkC+k+Cv+apyf++e+ + +fa++hk+FGasn +kll +lp e+r++a+ s++yeAear++dPvyG+v++i +lqqq+++lk PSME_00054308-RA 7 PCGACKFLRRKCVKGCVFAPYFCSEEmgAPRFAAIHKVFGASNFSKLLMHLPVEHRDNAVVSVLYEAEARLQDPVYGCVSHIYALQQQVANLK 99 7***********************995569**************************************************************9 PP DUF260 92 aelal 96 +la+ PSME_00054308-RA 100 GNLAA 104 98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.413 | 6 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-36 | 7 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MRGGGAPCGA CKFLRRKCVK GCVFAPYFCS EEMGAPRFAA IHKVFGASNF SKLLMHLPVE 60 HRDNAVVSVL YEAEARLQDP VYGCVSHIYA LQQQVANLKG NLAAGYAQLA DCIHSDGSSL 120 NPAVHDQYDQ QSEMPSLTSS SNGSSPSPYD KQYLNAWGVP QQIPSDNVKI NNYNEEAGDD 180 KGLWSSYSVC MEGSTHPMST AQGTHVFQNG ERFSEQRHLD NNENGDLEDL VWAILRRNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-38 | 3 | 109 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-38 | 3 | 109 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2G9H1E5 | 6e-52 | A0A2G9H1E5_9LAMI; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P25190_001 | 2e-52 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 3e-50 | LBD family protein |