PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00054149-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 97aa MW: 10833.4 Da PI: 5.8128 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 58.9 | 1.4e-18 | 24 | 96 | 8 | 80 |
DUF260 8 lrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 ++++C ++C l f +++ +kf +++++FGa nv+kl ++lp ++r +a++s+vy+A+ar+++ G++g i PSME_00054149-RA 24 KQKECLENCSLLYQFTSNDIHKFTILQQVFGACNVVKLTQDLPSNQRVEAIDSMVYKANARLENLAFGCTGKI 96 4679******************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 13.678 | 16 | 97 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-17 | 24 | 96 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
MQIMSNSEEK TSIGADVADS KIQKQKECLE NCSLLYQFTS NDIHKFTILQ QVFGACNVVK 60 LTQDLPSNQR VEAIDSMVYK ANARLENLAF GCTGKIQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9P1U3 | 2e-29 | A9P1U3_PICSI; Uncharacterized protein | ||||
STRING | XP_010669677.1 | 4e-19 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-21 | LOB domain-containing protein 1 |