PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00054096-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GATA
Protein Properties Length: 395aa    MW: 43958.6 Da    PI: 5.0151
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00054096-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17270304135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  PSME_00054096-RA 270 CMHCDTMKTPQWRTGPMGPKTLCNACGVRYKSGRL 304
                       99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.517264300IPR000679Zinc finger, GATA-type
SMARTSM004012.3E-15264314IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-15268327No hitNo description
Gene3DG3DSA:3.30.50.101.2E-14268302IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.10E-12269316No hitNo description
PROSITE patternPS003440270295IPR000679Zinc finger, GATA-type
PfamPF003204.3E-15270304IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MEAADCLYGT NYGTPFLDGK KSSGKFTELK NGVQLQDFFH IDDLLDFSNE EIAGPIGDDG  60
NNWPSCTTTA VTAAADSSTI TLTETLSCNS SLDGKSFRAY NVLETDENNN GHLCVPCDDL  120
AELEWLSNFV EDSFSTEQAP KPIFPSNFGD VRTVKEEEKP HIAIPIRSIS PMSGLDTSSS  180
SWKTPSFCPE TPVPGRARSK RSRAPACNWS SRIVSPASSA SALENGPTSS VLSSDSEFFA  240
ESYFPAKKPA KMFHGNKKRE QEQLTQIRKC MHCDTMKTPQ WRTGPMGPKT LCNACGVRYK  300
SGRLVPEYRP AASPTFVVSK HSNSHRKVIE MRRQKELQEA LQQASKLYSN DKQGDEEYGD  360
EYEEEEDGSD GQYPHFGSDD DNYLVHTKQD YRHFI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1070120.0BT107012.1 Picea glauca clone GQ03101_M09 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-59GATA transcription factor 9