PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00053990-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 106aa MW: 12565.3 Da PI: 7.6241 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 91.8 | 1.2e-28 | 28 | 106 | 2 | 81 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 ppGfrF Ptdeelvv+yL+kk++++ +++ +i+evd+yk++Pw+Lp k+ +ekewyfF++rd+ky++g+r++ra++sg PSME_00053990-RA 28 PPGFRFFPTDEELVVHYLCKKAASQIIHV-PIIAEVDLYKYDPWKLPDKALFGEKEWYFFTPRDRKYPNGSRPKRAARSG 106 9**************************99.88***************8777899*********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-32 | 21 | 106 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.93 | 27 | 106 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-12 | 28 | 104 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MGTSLGDFHE EQPWILKNMD CHEHNQWPPG FRFFPTDEEL VVHYLCKKAA SQIIHVPIIA 60 EVDLYKYDPW KLPDKALFGE KEWYFFTPRD RKYPNGSRPK RAARSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-41 | 15 | 106 | 3 | 94 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019200440.1 | 1e-43 | PREDICTED: NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 3e-42 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A3G2WJF9 | 3e-44 | A0A3G2WJF9_PICWI; NAC2 | ||||
STRING | XP_010268987.1 | 9e-42 | (Nelumbo nucifera) | ||||
STRING | GSMUA_Achr6P32330_001 | 4e-42 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-44 | NAC family protein |