PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00053960-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 107aa MW: 12655.4 Da PI: 6.9415 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 89.5 | 5.9e-28 | 28 | 107 | 2 | 82 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 ppGfrF Ptdeelvv+yL+kk++++ +++ +i ev++yk++Pw+Lp k +ekewyfF++rd+ky++g+r++r++ sgy PSME_00053960-RA 28 PPGFRFFPTDEELVVHYLCKKATSQIIPV-PIIVEVGLYKYDPWQLPDKSLFGEKEWYFFTTRDRKYPNGSRTKRVAGSGY 107 9****************************.88***************7777799**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.37E-33 | 21 | 107 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.173 | 27 | 107 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-12 | 28 | 106 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MGTSLGEFHE EQPWILKNMD CHEHNQWPPG FRFFPTDEEL VVHYLCKKAT SQIIPVPIIV 60 EVGLYKYDPW QLPDKSLFGE KEWYFFTTRD RKYPNGSRTK RVAGSGY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-40 | 15 | 107 | 3 | 95 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010931441.1 | 9e-42 | NAC domain-containing protein 68 isoform X1 | ||||
Swissprot | Q52QH4 | 1e-39 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
TrEMBL | A0A0D6R3P9 | 7e-44 | A0A0D6R3P9_ARACU; Uncharacterized protein | ||||
STRING | VIT_06s0004g00020.t01 | 8e-41 | (Vitis vinifera) | ||||
STRING | GSMUA_Achr6P32330_001 | 7e-41 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-41 | NAC family protein |