PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00053904-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family Trihelix
Protein Properties Length: 716aa    MW: 80246.1 Da    PI: 6.4196
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00053904-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix98.65.3e-31137221187
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                       rW++qe+laL+++r+em+  +r+++lk+plW+evs++++e gf+rs+k+Ckek+en+nk+yk++k+g+++r  ++ +t+++f+qlea
  PSME_00053904-RA 137 RWPRQETLALLKIRSEMDAVFRDASLKAPLWDEVSRNLAELGFHRSAKKCKEKFENVNKYYKRTKAGRSGR--QDGKTYKFFNQLEA 221
                       8********************************************************************98..56667*******85 PP
2trihelix100.11.8e-31446530186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       rW+kqev+ Li++r+ +e r+ ++  k++lW+++s+ m++ g++rs+k+Ckekwen+nk+++k+ke++++r +++ +tcpyf+ql+
  PSME_00053904-RA 446 RWPKQEVHGLIKVRSALEPRFHDSGPKAQLWDQISAEMAAMGYHRSAKRCKEKWENINKYFRKTKESNRER-PGNNNTCPYFHQLD 530
                       8*********************************************************************8.88889*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.025134196IPR001005SANT/Myb domain
CDDcd122037.91E-27136201No hitNo description
PROSITE profilePS500906.76136194IPR017877Myb-like domain
PfamPF138373.8E-21136222No hitNo description
PROSITE profilePS500906.98439503IPR017877Myb-like domain
SMARTSM007170.025443505IPR001005SANT/Myb domain
CDDcd122036.32E-26445510No hitNo description
PfamPF138379.1E-22445532No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MKEKGEGSER ILEAGRPQQF GLPQHQSDSM LPQFLASLTK ESPHFQTSER FENESKESRD  60
QTPLPSTTAP KKPKDIGEFS SDLPHLVASP ISCRPPAVSG SDGVFKQAVH DPDENNNNNN  120
AADLGDDDAF GGSGGSRWPR QETLALLKIR SEMDAVFRDA SLKAPLWDEV SRNLAELGFH  180
RSAKKCKEKF ENVNKYYKRT KAGRSGRQDG KTYKFFNQLE ALYGNTDDTA IVDNNTSRNN  240
TVMAASGSNH EFQATPSPPP AAVAANRSED TQVPEEIKPP AAAELSPMSF STESSDETHD  300
DNNISADTRR SRKRKRITTK KMMRFVEKLM ERVMEKQEMM QQRFLEMIDK REQERMIREE  360
AWRRQEIVRL SRENELRSQE RALSASRDRT LVAFLQKVTG QTVDLPDQFP VSQPISPAPA  420
QQINPRPEEI SKDNNETDSL DPNSKRWPKQ EVHGLIKVRS ALEPRFHDSG PKAQLWDQIS  480
AEMAAMGYHR SAKRCKEKWE NINKYFRKTK ESNRERPGNN NTCPYFHQLD SLYTKGILGY  540
SNSEKLNRTR DQDQQQEELL EQTTCGSSRD DQSPGHDGDN EILAIMPPPS ITTAQPPSNF  600
FSAVQPENHV NGGQTGSPTK AMLSSVSEGL LGNSTSKPDS TTIMMFQTCS QSAPTLSTTI  660
TVEDGKNKLE KQADLDLPYG VYDDRAGNSA SNVPRDSSAA FMGAMVVDPP QFHMPK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308314RRSRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1012091e-152BT101209.1 Picea glauca clone GQ0073_B07 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402443.11e-141trihelix transcription factor GTL1-like
TrEMBLA0A0C9S8E90.0A0A0C9S8E9_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_4737_2607 transcribed RNA sequence
STRINGPP1S19_341V6.11e-140(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.13e-62Trihelix family protein