PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00053886-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 312aa    MW: 35303.7 Da    PI: 9.6121
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00053886-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-083680446
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      W+ +  +l+ +a + + ++   +W++++++++ g+t+ +++ ++ +
  PSME_00053886-RA 36 WSLQQNKLFENALAIYDKDtpdRWEKVSKMLP-GKTAIDVRKHYED 80
                      ********************************.***********76 PP
2Myb_DNA-binding34.74e-11144187447
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       WT++E+ +++ + +++G+g W+ I+r     Rt+ q+ s+ qky
  PSME_00053886-RA 144 WTEDEHRQFLLGLHKFGKGYWRNISRNYVVSRTPAQVASHAQKY 187
                       *******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.7E-83284IPR001005SANT/Myb domain
SuperFamilySSF466891.73E-113490IPR009057Homeodomain-like
PfamPF002493.6E-63681IPR001005SANT/Myb domain
PROSITE profilePS500906.333682IPR017877Myb-like domain
CDDcd001671.01E-54282No hitNo description
PROSITE profilePS5129416.619136192IPR017930Myb domain
SuperFamilySSF466891.1E-15137192IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-16139190IPR006447Myb domain, plants
SMARTSM007175.5E-8140190IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-8141186IPR009057Homeodomain-like
PfamPF002494.8E-9144187IPR001005SANT/Myb domain
CDDcd001677.19E-8144188No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MPYFLSSFSQ DFKIYAMWQM EFPSQETSLS SSGSFWSLQQ NKLFENALAI YDKDTPDRWE  60
KVSKMLPGKT AIDVRKHYED LVEDVTCIED GRVALPTYSN SSCTLEWIAE KSGDMHGLKQ  120
QFGSGGKGPS TKPSEQERKK GVLWTEDEHR QFLLGLHKFG KGYWRNISRN YVVSRTPAQV  180
ASHAQKYFIR LSSDNKNKRR SSIHDITTVN GTDRRPFRLP QTSTRQTDSP SRQADINHSP  240
CLTYPSSISR GHLINSLGSQ ADGSPLMSPH YPLSLYTQRG FGGHSPRIII PDSSIGIGMR  300
HLGYLGQPAM QY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-2028101376RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322964.28e-78transcription factor DIVARICATA
SwissprotQ8S9H79e-70DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0D6R2Q18e-82A0A0D6R2Q1_ARACU; Uncharacterized protein
STRINGPOPTR_0016s11980.13e-77(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-65MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]