PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00053883-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HSF
Protein Properties Length: 262aa    MW: 28878.5 Da    PI: 8.6366
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00053883-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.73.7e-33511432103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl k+y++++d+++++++sw +++n+fvv+ ++ef+ +vLp yF h+nf+SFvRQLn+YgF+k+ + +          eF+++ F+kg+++ll
  PSME_00053883-RA  51 FLVKTYRLVDDPSTDHIVSWGDHNNTFVVWRPKEFSVSVLPCYFNHTNFSSFVRQLNTYGFRKIARGR---------CEFANDLFRKGQTQLL 134
                       9***************************************************************9998.........67************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++i+r+k +
  PSME_00053883-RA 135 SHIQRRKPS 143
                       ******976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.0E-5047140IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.16E-3349140IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.3E-3649140IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.0E-2951140IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-185174IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-1889101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-18102114IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MLAWVAAAAA EKEAAANASR SVLMGVGAGC VKDASAGGAV RDAGRLVASP FLVKTYRLVD  60
DPSTDHIVSW GDHNNTFVVW RPKEFSVSVL PCYFNHTNFS SFVRQLNTYG FRKIARGRCE  120
FANDLFRKGQ TQLLSHIQRR KPSNSSPLQP SQMEFNKSSS QISNSNSNSN SLSTVEDSDV  180
LAAAPSLSEE NEILKRNNLL LLSEIARLQN IYSRDITVIN RHNNVRNFLL IDIDNPSPSS  240
SFRDVAEENS MSPPKLFGVP LC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-21261403129Heat shock factor protein 1
5d5v_B3e-21261403129Heat shock factor protein 1
5d5v_D3e-21261403129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1119111e-124BT111911.1 Picea glauca clone GQ03307_F23 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251349.31e-57heat stress transcription factor B-4b-like
SwissprotQ9C6351e-51HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLH9WK881e-75H9WK88_PINTA; Uncharacterized protein (Fragment)
STRINGSolyc11g064990.1.15e-57(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-51heat shock transcription factor B4