PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00053758-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HSF
Protein Properties Length: 349aa    MW: 39096.9 Da    PI: 6.0774
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00053758-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.11.1e-36271182102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d++l+++isw+e+g++f+v+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+ll
  PSME_00053758-RA  27 FLMKTYRLVDDPSLNDIISWNEDGTTFIVWRPAEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFRRGEKKLL 110
                       9*****************************************************************99.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k+
  PSME_00053758-RA 111 CEIHRRKN 118
                       ******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-3818111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.1E-5823116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.16E-3524116IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-3227116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-192750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MAQSLEQPND ATVPLPAESH RSIPTPFLMK TYRLVDDPSL NDIISWNEDG TTFIVWRPAE  60
FARDLLPNYF KHNNFSSFVR QLNTYGFRKI VPDRWEFANE FFRRGEKKLL CEIHRRKNPQ  120
ANGATANRPA SPSLTGEDQQ GCSSALLPLS SPAETGGLLD ENERLKQQNL LLMSEVAQIK  180
SLCSDILTFM SKHANISAES LRESLDLNNV PDSFQQGVPL EGSPAQSKDS CQRTQLCSSV  240
HLFENETTNS SGNSREMADG KCVDSVKDED KDNSASPKLF GVPLLSKKRS RTCSLDNDEK  300
PEVNGNLFCT GNDAALKCVK QEPGLELELR QKQAPWLKFR SVRNEKVCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-212711629129Heat shock factor protein 1
5d5v_B6e-212711629129Heat shock factor protein 1
5d5v_D6e-212711629129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1155320.0BT115532.1 Picea glauca clone GQ03701_B17 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ6Z9C81e-69HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA0A0D6R6B31e-114A0A0D6R6B3_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.15e-66heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]