PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PSME_00053746-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 160aa MW: 17886.4 Da PI: 5.8601 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.8 | 9.9e-40 | 9 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaCk++r+kC ++C++apyfp+e+ kf vh++FG +nv+kll++lp e+r +a++s+vyeA+ r+rdPv+G++gvi++l++++e+l+++ PSME_00053746-RA 9 ACAACKMQRKKCGENCMIAPYFPQEDLDKFLLVHRIFGKANVIKLLQDLPVEKRGEAVNSIVYEARERVRDPVHGCFGVINDLHKKIEELQSK 101 7******************************************************************************************** PP DUF260 94 lallk 98 la+++ PSME_00053746-RA 102 LAAAE 106 *9886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.425 | 8 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-38 | 9 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 160 aa Download sequence Send to blast |
MNSTLPTAAC AACKMQRKKC GENCMIAPYF PQEDLDKFLL VHRIFGKANV IKLLQDLPVE 60 KRGEAVNSIV YEARERVRDP VHGCFGVIND LHKKIEELQS KLAAAEAGLA ANMQSVQHAN 120 LISTLYYHEA SGAAHEFNNA SLHDLDDDVD PLQLWEPLWT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-32 | 8 | 109 | 10 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-32 | 8 | 109 | 10 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008224697.1 | 2e-44 | PREDICTED: LOB domain-containing protein 1-like | ||||
TrEMBL | B8LQI9 | 7e-58 | B8LQI9_PICSI; Uncharacterized protein | ||||
STRING | XP_008224697.1 | 7e-44 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07900.1 | 4e-42 | LOB domain-containing protein 1 |