PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00053721-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 200aa MW: 22703.3 Da PI: 4.8292 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.4 | 5.1e-11 | 2 | 31 | 16 | 47 |
HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++lG++ W++Ia +++ gRt++++k++w++ PSME_00053721-RA 2 HRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTC 31 789****.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-15 | 1 | 33 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.326 | 1 | 36 | IPR017930 | Myb domain |
CDD | cd00167 | 3.04E-7 | 1 | 30 | No hit | No description |
Pfam | PF00249 | 5.8E-9 | 2 | 31 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.56E-8 | 2 | 36 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MHRLLGNRWS LIAGRLPGRT DNEIKNYWNT CLRRKTLSVN KNQSKSNSQN LESRSNIPSP 60 ALPSHVFKTQ PVKPAAVIYS EILRSNRCTG YGPSDCRSEE PVKLCNVKES TNSSTDYDRK 120 TIDFEMADVN LLETKAGNYS CSIWNLEEER SLPDSYCCPE DTAAFFESLL ELNRLPSPDC 180 NLLSSPVDCS TDFEVEEFYE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LMJ6 | 4e-45 | B8LMJ6_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 2e-17 | myb domain protein 5 |