PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00053679-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | BES1 | ||||||||
Protein Properties | Length: 277aa MW: 30040.7 Da PI: 7.6772 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 153.3 | 1.9e-47 | 6 | 88 | 5 | 87 |
DUF822 5 rkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssas 87 r p+wkErEnnk+RERrRRaiaaki++GLR +Gnyklpk++DnneVlkALc+eAGwvve+DG y+kg++p e ++ + ++ PSME_00053679-RA 6 RLPNWKERENNKKRERRRRAIAAKIFTGLRLYGNYKLPKHCDNNEVLKALCAEAGWVVEEDGSAYKKGMRPSECMNGVSLGNN 88 889*********************************************************************77776654444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.5E-44 | 6 | 96 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MSLVNRLPNW KERENNKKRE RRRRAIAAKI FTGLRLYGNY KLPKHCDNNE VLKALCAEAG 60 WVVEEDGSAY KKGMRPSECM NGVSLGNNTS CGLSENGSLI PWLKDLGSSG GSASDGLQSR 120 SCSEPVTPPL SSPTTINSSS AIPYNIKREC YKDTSDGSQG GFFNSVMWPP MQLPHQSAFS 180 AFNSQIDPAP LVRIFADQAC GIGAVYHDCI NNSKADSAGA DSHSAIGSEN NPVQKMTMSS 240 GLSAWEGEKL HDSGRDELEL TLGCSSLSKT RVPRFEV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 9e-22 | 6 | 76 | 372 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 9e-22 | 6 | 76 | 372 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 9e-22 | 6 | 76 | 372 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 9e-22 | 6 | 76 | 372 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT111926 | 1e-91 | BT111926.1 Picea glauca clone GQ03307_L18 mRNA sequence. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78700.1 | 3e-28 | BES1/BZR1 homolog 4 |