PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00053420-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 314aa MW: 36363.3 Da PI: 5.4223

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00053420-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	134.1	9.3e-42	20	146	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pGfrF Pt+eel+++yLkk+v+g + l+l+ +i++v++y+++Pw+Lp ++ +e++w+fF++rd++++ r++r+t sgyWkatg+d++v PSME_00053420-RA 20 PGFRFYPTEEELLSFYLKKRVTGCDqLNLDIIIPTVQLYHYDPWELPgFVHYVGERQWFFFVPRDHNKS-CPRPSRMTVSGYWKATGSDRAVR 111 9******************99875777667***********666777999*****9876.68******************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + +glkk+Lvfykg+ap++++tdW+m+eyr+ PSME_00053420-RA 112 NELLQCIGLKKILVFYKGKAPRSQRTDWIMNEYRM 146 99999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.92E-45	17	167	IPR003441	NAC domain
PROSITE profile	PS51005	48.422	18	167	IPR003441	NAC domain
Pfam	PF02365	1.0E-22	20	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MQEEIYNDWK VKGEEIMDLP GFRFYPTEEE LLSFYLKKRV TGCDQLNLDI IIPTVQLYHY 60 DPWELPGFVH YVGERQWFFF VPRDHNKSCP RPSRMTVSGY WKATGSDRAV RNELLQCIGL 120 KKILVFYKGK APRSQRTDWI MNEYRMPYSR LSAPKKTDIV LCRIYRKAAS NKSMEHPATQ 180 DYLDKEEPVV SGYNYGEKSH SVTLDHHDSY QLSNPVEKSD VFSLHYNVDD EGVGSSDPGK 240 SNVKEDSFFD CLEPIMEPII CSEETTVLKT LTACNPAQLE LPKLSMDSWL SQPISTYSLL 300 PTPLPIDFPT DHMF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-41	20	170	19	168	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-41	20	170	19	168	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-41	20	170	19	168	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-41	20	170	19	168	NO APICAL MERISTEM PROTEIN
3swm_A	4e-41	20	170	22	171	NAC domain-containing protein 19
3swm_B	4e-41	20	170	22	171	NAC domain-containing protein 19
3swm_C	4e-41	20	170	22	171	NAC domain-containing protein 19
3swm_D	4e-41	20	170	22	171	NAC domain-containing protein 19
3swp_A	4e-41	20	170	22	171	NAC domain-containing protein 19
3swp_B	4e-41	20	170	22	171	NAC domain-containing protein 19
3swp_C	4e-41	20	170	22	171	NAC domain-containing protein 19
3swp_D	4e-41	20	170	22	171	NAC domain-containing protein 19
4dul_A	3e-41	20	170	19	168	NAC domain-containing protein 19
4dul_B	3e-41	20	170	19	168	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008791987.1	1e-59	NAC domain-containing protein 22-like
TrEMBL	A0A075M5N5	1e-137	A0A075M5N5_9SPER; NAC domain protein
STRING	Pavir.Db00028.1.p	1e-58	(Panicum virgatum)
STRING	XP_008791987.1	6e-59	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	1e-54	NAC domain containing protein 35