PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00053390-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 189aa MW: 21346.2 Da PI: 8.1068 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 44.9 | 3.4e-14 | 75 | 128 | 46 | 99 |
DUF260 46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +++ +e+r +++ss+vyeA r+rdPv+G++gvi++l++++++l+++la++++ PSME_00053390-RA 75 CQQITKEQRGEVVSSMVYEATERLRDPVHGCLGVINDLHKKIAELESQLASTEA 128 68999********************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 8.805 | 27 | 130 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-12 | 76 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
RSSSSILSTF RYDGKRRRRD KQYRLKARAV ACIFLCCLQD PEKEMYREMP SRAIFPAGRS 60 RKVPIGSQSL WKRPCQQITK EQRGEVVSSM VYEATERLRD PVHGCLGVIN DLHKKIAELE 120 SQLASTEAAL ANISVQYGNL LTLITGCNEG SDPNFYSAST QESEDTDTSR SPTVVNDVDP 180 VQLWDALWI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 15 | 20 | RRRRDK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LQI9 | 2e-38 | B8LQI9_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-18 | LOB domain-containing protein 1 |