PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00053331-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 356aa    MW: 39870.6 Da    PI: 5.3029
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00053331-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.2e-171562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd+ll++++++ G g+W++ ++  g+ R++k+c++rw +yl
  PSME_00053331-RA 15 KGPWTPEEDKLLLNYIQKNGHGSWRALPELAGLLRCGKSCRLRWMNYL 62
                      79******************************99************97 PP

2Myb_DNA-binding40.94.9e-1368111146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg++T+e++  +++++  lG++ W++I + ++ gRt++++k++w +
  PSME_00053331-RA  68 RGSFTEEDERTIIQLHGILGNR-WSAIVSQLP-GRTDNEIKNFWST 111
                       89********************.*********.***********65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-23665IPR009057Homeodomain-like
PROSITE profilePS5129415.8231062IPR017930Myb domain
SuperFamilySSF466896.53E-3012109IPR009057Homeodomain-like
SMARTSM007179.9E-141464IPR001005SANT/Myb domain
PfamPF002491.3E-161562IPR001005SANT/Myb domain
CDDcd001671.29E-101762No hitNo description
PROSITE profilePS5129423.12463117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2366117IPR009057Homeodomain-like
SMARTSM007171.8E-1367115IPR001005SANT/Myb domain
PfamPF002498.8E-1268111IPR001005SANT/Myb domain
CDDcd001676.23E-970109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MMGRVPCSEK TGLKKGPWTP EEDKLLLNYI QKNGHGSWRA LPELAGLLRC GKSCRLRWMN  60
YLRPDIKRGS FTEEDERTII QLHGILGNRW SAIVSQLPGR TDNEIKNFWS TRLKKRLLKM  120
GLDPATHAPK EANLTADPER LEALSLTRHK AQWENARLEA EARLSRESLL MLSSNSAAGY  180
HTNNTAETMT TPASNNPVPC IDYFLKIRNS EAGTAFRNKE THHPNREGDN SEIPVISSVS  240
SMMCCAASTG QNSCDESLNP IDKDKHNGSQ ECGDCNLETG GVLSCFADMA TGKMEDKTTE  300
ELDFPELLLD FSDNDDNSNN QSELITAFQQ KPASPWPQLH DEDFWSNLSF IDHDSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-271311725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027927284.12e-95transcription factor MYB41-like
TrEMBLA0A222UAM76e-97A0A222UAM7_GINBI; R2R3MYB15
STRINGVIT_15s0046g03190.t011e-91(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.12e-83myb domain protein 17