PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00053305-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 290aa MW: 32675.6 Da PI: 8.0287

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00053305-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.7	2.8e-33	46	189	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 lp G++F+Ptd+el+ e+L+ kv ++ +++ +i++++ i++++P++Lp ++ + +fF++ +k+y+tg+rk+r+ PSME_00053305-RA 46 LPYGVKFDPTDQELI-EHLQGKVGFDNyaphplIDE--FIPTIGgddgICYTHPEKLP-GIARDGLIRHFFHRPSKAYTTGTRKRRKiqtacd 134 699**********.99*9998788644333..3444422235******.555555677**************8566666 PP NAM 78 ...tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++vl+ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l PSME_00053305-RA 135 essEGETRWHKTGKTRPVLV-NGKQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 189 65444778********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.19E-38	34	208	IPR003441	NAC domain
PROSITE profile	PS51005	32.596	46	208	IPR003441	NAC domain
Pfam	PF02365	1.3E-15	47	189	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MAGSNKNSTS SSQLIDAKLE EYRIKRCPAC GHQIERQEAL QDWPGLPYGV KFDPTDQELI 60 EHLQGKVGFD NYAPHPLIDE FIPTIGGDDG ICYTHPEKLP GIARDGLIRH FFHRPSKAYT 120 TGTRKRRKIQ TACDESSEGE TRWHKTGKTR PVLVNGKQKG CKKILVLYTN FGKHRKPEKT 180 NWVMHQYHLG SQEEEKEGEL VVSKVFYQTQ PRQCNWEKAT DVGDIAKACI TDAAQVSERC 240 TAGEINGFTA KNIYTAFNHL EQQAKVTQSS HNLSLAQSRS ESSDQVSISE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-12	46	189	15	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT106946	0.0	BT106946.1 Picea glauca clone GQ03101_A16 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025012293.1	1e-121	NAC domain-containing protein 75 isoform X1
Refseq	XP_025012294.1	1e-121	NAC domain-containing protein 75 isoform X1
Refseq	XP_025012295.1	1e-121	NAC domain-containing protein 75 isoform X2
Swissprot	Q9M0F8	1e-121	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	E0ZFA1	1e-138	E0ZFA1_PICSI; No apical meristem-like protein (Fragment)
STRING	XP_002514192.1	1e-120	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-123	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]