PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00053293-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | HSF | ||||||||
Protein Properties | Length: 241aa MW: 27095 Da PI: 10.0843 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 106.7 | 1.8e-33 | 33 | 125 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl k+y++++d+++++++sw +++n+fvv+ ++ef+ ++Lp+yF h+nf+SFvRQLn YgF+k+ + + eF +k Fkkg+k+ll PSME_00053293-RA 33 FLVKTYRLVDDPSTDHIVSWGDHKNTFVVWRPKEFSASLLPRYFNHTNFSSFVRQLNNYGFRKIVRGR---------CEFVNKLFKKGQKHLL 116 9***************************************************************9988.........67************** PP XXXXXXXXX CS HSF_DNA-bind 95 ekikrkkse 103 ++i+rkk + PSME_00053293-RA 117 THIQRKKPS 125 ******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 6.8E-48 | 29 | 122 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 4.0E-36 | 30 | 122 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.01E-31 | 31 | 122 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 5.3E-18 | 33 | 56 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.1E-29 | 33 | 122 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.3E-18 | 71 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.3E-18 | 84 | 96 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MADQEVANAD RIVMVGGGSV KDAAAGRFEA APFLVKTYRL VDDPSTDHIV SWGDHKNTFV 60 VWRPKEFSAS LLPRYFNHTN FSSFVRQLNN YGFRKIVRGR CEFVNKLFKK GQKHLLTHIQ 120 RKKPSTISTT QNMEHDKSCS SFPPISSTQQ SDVRAAPPSL SVLEIETLRR NNYLLISEIA 180 RLQNICSGDI RLLIRPNTRN PPLIDMGRSK IDNPSPSSSI TDVTEEIGMN PPPRLFGVPL 240 C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-22 | 20 | 122 | 16 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-22 | 20 | 122 | 16 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-22 | 20 | 122 | 16 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9C635 | 1e-45 | HSFB4_ARATH; Heat stress transcription factor B-4 | ||||
TrEMBL | H9WUJ3 | 6e-74 | H9WUJ3_PINTA; Uncharacterized protein (Fragment) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 5e-48 | heat shock transcription factor B4 |