PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00053252-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 316aa    MW: 35209.2 Da    PI: 4.4601
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00053252-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like67.52.2e-21220267351
           G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                        ++Wt ++H++Fv+aveqL G ++ +P++ilelmkv+gLt ++v+SHLQ
  PSME_00053252-RA 220 NVEWTMDMHRHFVQAVEQL-GVDQGIPSRILELMKVDGLTQHNVASHLQ 267
                       579****************.****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.55E-12217267IPR009057Homeodomain-like
TIGRFAMsTIGR015578.5E-19220267IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.7E-19220267IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MLHLRPELTN VKSAQNEDSF DGRKIEANTL HEVQSCIPIL TDSIKQDTSI EPCNSEKFPT  60
PSTPQLEQGG RSPSKEDKTL ILDDTINFKA RTTHADNNCE YETIRVLRLD AEATSAWSSQ  120
FDSPTSVKKE TQDMYIISLK TRNSTQCGLK SVDITSDQLG NEITSRVTSL HSRFETVDVQ  180
VVNAPGIAEE EVGFAEDSKS DDENIEKEAI LSSYACNEEN VEWTMDMHRH FVQAVEQLGV  240
DQGIPSRILE LMKVDGLTQH NVASHLQPKE VIDESFKEAL NNPWTALPLG LKPPSMESVM  300
TELQRQGISK IPPPAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1078843e-58BT107884.1 Picea glauca clone GQ03113_O04 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.51e-18ARR-B family protein