PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00053243-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 99aa    MW: 11000.4 Da    PI: 5.1177
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00053243-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.8e-084986544
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                      +++E++l+ +++k+lG++ W++Ia +++  R ++++ ++ 
  PSME_00053243-RA 49 SADEEDLINRLHKLLGNR-WALIAGRLP-WRGAEEIENYC 86
                      789***************.*********.*****999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00314492IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-94985IPR009057Homeodomain-like
PfamPF002493.8E-74987IPR001005SANT/Myb domain
SuperFamilySSF466892.62E-54985IPR009057Homeodomain-like
CDDcd001672.14E-54988No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MDIRDTVQRF SPPKAEGDCN GSPGRVLISL CGINVDYCKE NACAAYDISA DEEDLINRLH  60
KLLGNRWALI AGRLPWRGAE EIENYCKMRY TATTSSSSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1093629e-84BT109362.1 Picea glauca clone GQ03207_J20 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NQX02e-20A9NQX0_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.17e-14MYB_related family protein