PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00053203-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 451aa MW: 49956.9 Da PI: 8.8151

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00053203-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.8	2.5e-10	303	351	5	55
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h+ +Er+RR+ +++ ++L +llP+ +++K ++ L +A++YI++Lq PSME_00053203-RA 303 HKVVERQRRSTMKTLCSTLISLLPEeY---HKTKHALSDKLLEAIKYIHHLQ 351 99*********************77...*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.039	298	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-11	299	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.6E-10	302	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.13E-10	303	354	No hit	No description
Pfam	PF00010	5.5E-7	303	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-4	304	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MYAEFTPHKL STQVAGGMHA GRSIKIIDFK SQDFVFTGLQ INFRGLSEIR CISMDYTVYM 60 KFNTDQKPEE GADARQAHNQ QQESSTRLSS TQIISSIHNF CNISVFNVAH TQQSLHRRET 120 FSNTTQPLHS SRRPLKMEDL WKNYQYPSEP SSSSKAAACF HQGNIDTNEG IQIRTAIQSL 180 KFGQPRACTG VDTTAAVIPD VFARKKPHDY GLLGTGSSGL GVQLDQTADD DSSPAVTQCW 240 QKIVANVGAE GQTLTSNTRA DSSLNSSNPN FHRPTGNNRW KTAAGGGGHN HMARRSTENG 300 HVHKVVERQR RSTMKTLCST LISLLPEEYH KTKHALSDKL LEAIKYIHHL QDTLTELENK 360 RDGLKLSGNV KPLYSSSSVY KNLQASEETF PTIRVSKFGS GIQVTANIFR NQIDFSSLLF 420 VLEDAGVEVV SASLSVINDK AFCSIHSQVF S

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MYAEFTPHKL STQVAGGMHA GRSIKIIDFK SQDFVFTGLQ INFRGLSEIR CISMDYTVYM  60
KFNTDQKPEE GADARQAHNQ QQESSTRLSS TQIISSIHNF CNISVFNVAH TQQSLHRRET  120
FSNTTQPLHS SRRPLKMEDL WKNYQYPSEP SSSSKAAACF HQGNIDTNEG IQIRTAIQSL  180
KFGQPRACTG VDTTAAVIPD VFARKKPHDY GLLGTGSSGL GVQLDQTADD DSSPAVTQCW  240
QKIVANVGAE GQTLTSNTRA DSSLNSSNPN FHRPTGNNRW KTAAGGGGHN HMARRSTENG  300
HVHKVVERQR RSTMKTLCST LISLLPEEYH KTKHALSDKL LEAIKYIHHL QDTLTELENK  360
RDGLKLSGNV KPLYSSSSVY KNLQASEETF PTIRVSKFGS GIQVTANIFR NQIDFSSLLF  420
VLEDAGVEVV SASLSVINDK AFCSIHSQVF S

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF086024	2e-45	EF086024.1 Picea sitchensis clone WS02814_A05 unknown mRNA.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	4e-15	bHLH family protein