PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00053192-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 307aa MW: 34518.2 Da PI: 9.5712

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00053192-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.5	2.2e-52	15	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv +yLkkkv++++l++ ++i ++d+yk++PwdLp+k+ +e+ewyfFs+rd+ky++g r+nr++ sgyWkatg+dk+++ PSME_00053192-RA 15 LPPGFRFHPTDEELVIHYLKKKVSSTPLPA-SIIGDIDLYKHDPWDLPSKACFGEQEWYFFSPRDRKYPNGARPNRSAGSGYWKATGTDKPIV 106 79**************************.89***********8777899********************************** PP NAM 94 sk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 k ++e+vg+kk+Lvfykgr kg kt+W+mheyrl PSME_00053192-RA 107 IKsrckSSEKVGVKKSLVFYKGRPLKGLKTNWIMHEYRL 145 9988888889*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-63	9	171	IPR003441	NAC domain
PROSITE profile	PS51005	60.953	15	171	IPR003441	NAC domain
Pfam	PF02365	2.8E-28	16	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MEGMAFQQQQ VVSQLPPGFR FHPTDEELVI HYLKKKVSST PLPASIIGDI DLYKHDPWDL 60 PSKACFGEQE WYFFSPRDRK YPNGARPNRS AGSGYWKATG TDKPIVIKSR CKSSEKVGVK 120 KSLVFYKGRP LKGLKTNWIM HEYRLAETMP TGKGKGSMRL DDWVLCRIYK KVSHSSRAVS 180 CSELELAAPS PVDVQQNPAV PTFGSFSRLL QNEGPFMESF LSHDMSGSNV AHSHMEPSSS 240 FQAVPKQQCK LNSSDTRHHM SMSMGFNGDE ASAAYAAKRQ NSQNPSPSLY LQSSNPYLAV 300 PYQQYMY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	6e-71	4	177	7	174	NAC domain-containing protein 19
3swm_B	6e-71	4	177	7	174	NAC domain-containing protein 19
3swm_C	6e-71	4	177	7	174	NAC domain-containing protein 19
3swm_D	6e-71	4	177	7	174	NAC domain-containing protein 19
3swp_A	6e-71	4	177	7	174	NAC domain-containing protein 19
3swp_B	6e-71	4	177	7	174	NAC domain-containing protein 19
3swp_C	6e-71	4	177	7	174	NAC domain-containing protein 19
3swp_D	6e-71	4	177	7	174	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007025712.1	4e-92	PREDICTED: NAC transcription factor 25
Swissprot	Q8H4S4	2e-85	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	D5ABS0	1e-125	D5ABS0_PICSI; Uncharacterized protein
STRING	EOY28334	2e-91	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	3e-86	NAC domain containing protein 47

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]