PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00053173-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

HD-ZIP

Protein Properties

Length: 380aa MW: 42786.5 Da PI: 7.688

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00053173-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60	3.9e-19	53	106	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q++ Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k PSME_00053173-RA 53 KKRRLSVDQVRSLEKSFEIENKLEPERKMQLAQQLGLQPRQVAVWFQNRRARWK 106 456899***********************************************9 PP
2	HD-ZIP_I/II	127.1	7.6e-41	52	143	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrls +qv++LE+sFe e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+ yeaLk+++da+++e+e+L++ev +L+++l+ PSME_00053173-RA 52 EKKRRLSVDQVRSLEKSFEIENKLEPERKMQLAQQLGLQPRQVAVWFQNRRARWKTKQLEHVYEALKQEFDAVRAEKEKLKAEVLQLTAKLE 143 69**************************************************************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.78E-19	39	110	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.346	48	108	IPR001356	Homeobox domain
SMART	SM00389	4.6E-18	51	112	IPR001356	Homeobox domain
Pfam	PF00046	2.3E-16	53	106	IPR001356	Homeobox domain
CDD	cd00086	3.87E-17	53	109	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.5E-20	55	115	IPR009057	Homeodomain-like
PRINTS	PR00031	7.7E-6	79	88	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	83	106	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.7E-6	88	104	IPR000047	Helix-turn-helix motif
Pfam	PF02183	9.0E-8	108	142	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MVQYLAGLHD GNRMCNNFGK RPFYSMFDCY QDEMEEKNMA EFSNPISNLH LEKKRRLSVD 60 QVRSLEKSFE IENKLEPERK MQLAQQLGLQ PRQVAVWFQN RRARWKTKQL EHVYEALKQE 120 FDAVRAEKEK LKAEVLQLTA KLETYKNNGI PGNGMGLNKI KADSSEQVEY VKTNVDRAVA 180 EQSHSLSEVE KPIQPDSCMQ EEVSKKMKDF SASSDTWSEN GDARSSEEAY TDEPSLVRLP 240 ETSNSKSTNY MYCEQQMNPI KLKKTVYKGD ELGRASGSLR TGEEQCVSLV QSSQVRYPFV 300 RGWDGVFISS SSPVGVGKAG AVALVSKGGA PCVQSLPVTG LLLLLFLCHS WHICQSSSGC 360 NTAFSGLRPM LTDPGWLVRP

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MVQYLAGLHD GNRMCNNFGK RPFYSMFDCY QDEMEEKNMA EFSNPISNLH LEKKRRLSVD  60
QVRSLEKSFE IENKLEPERK MQLAQQLGLQ PRQVAVWFQN RRARWKTKQL EHVYEALKQE  120
FDAVRAEKEK LKAEVLQLTA KLETYKNNGI PGNGMGLNKI KADSSEQVEY VKTNVDRAVA  180
EQSHSLSEVE KPIQPDSCMQ EEVSKKMKDF SASSDTWSEN GDARSSEEAY TDEPSLVRLP  240
ETSNSKSTNY MYCEQQMNPI KLKKTVYKGD ELGRASGSLR TGEEQCVSLV QSSQVRYPFV  300
RGWDGVFISS SSPVGVGKAG AVALVSKGGA PCVQSLPVTG LLLLLFLCHS WHICQSSSGC  360
NTAFSGLRPM LTDPGWLVRP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	108	RRARWKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65310.1	3e-38	homeobox protein 5