PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00053162-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 525aa    MW: 59193.5 Da    PI: 6.3536
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00053162-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.85e-132270148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEd +l+++  +  +g +W+ +a+ +g++R++k+c++rw +yl
  PSME_00053162-RA 22 KGLWSPEEDAKLINYMLRNNSGsSWSNVAKQLGLHRCGKSCRLRWINYL 70
                      678*****************99*************************97 PP
2Myb_DNA-binding44.43.9e-1476119146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ + +E++l++++   lG++ W+ Ia++++ gRt++++k++w++
  PSME_00053162-RA  76 RGAISLQEEQLIIHLQSILGNR-WSQIAAHLP-GRTDNEIKNYWNT 119
                       678899****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.871770IPR017930Myb domain
SuperFamilySSF466891.72E-2520117IPR009057Homeodomain-like
SMARTSM007177.4E-102172IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-212377IPR009057Homeodomain-like
CDDcd001671.56E-72570No hitNo description
PfamPF139211.5E-122586No hitNo description
PROSITE profilePS5129424.22971125IPR017930Myb domain
SMARTSM007174.9E-1475123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2378125IPR009057Homeodomain-like
CDDcd001676.34E-1080119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MGWTQVQGQD SPVSSKLAKV KKGLWSPEED AKLINYMLRN NSGSSWSNVA KQLGLHRCGK  60
SCRLRWINYL RPGLKRGAIS LQEEQLIIHL QSILGNRWSQ IAAHLPGRTD NEIKNYWNTC  120
IKKKLNLNHR LPSSTESNGN NSTEYNIPPR SGHICDTNSV SSHTHDAYKS IHSAKPEGYL  180
QLHDNNFNAV TTAEYQYSCV FSTHEQLQEQ NNVFSVDEDS TKKKIIYESQ HWFDSTDSTS  240
VQTNENFSEA FASPSLQSLG HTYKTEKSSR CDQLRHSWTT LPAHEATGSA NNTLGCIITI  300
PALVDISDSL KGNLENDGHI INENENNIMM HDSFLAASSG ITSWSANHSY PIAADQFTDV  360
YDVYPGAYIP HKVEESMSLE EKISHQPCSP QSSRSQFRPP PILSADIDQY LNIQAQCQKG  420
KNDCDNHVTL RCNEVNMGVP TLININRQKN YQLEDCDQWD CSTISIEEGK ATPSPTIVGR  480
RGENRTIDFQ CEKESNQVTV WAQDDHMYSI KTHDSFSDLG QICFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-23221267109B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA5JYE87e-84A5JYE8_PICGL; R2R3-MYB transcription factor MYB4
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.16e-52myb domain protein 46