PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00053156-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 289aa    MW: 32948.5 Da    PI: 5.4614
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00053156-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-152269148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT eEd++l  ++ ++G g+W+  a+  g++Rt+ +c++rw +yl
  PSME_00053156-RA 22 KGPWTVEEDLQLTSYISLHGQGRWSFLAKAAGLNRTGRSCRLRWINYL 69
                      79********************************************97 PP
2Myb_DNA-binding46.49.3e-1575118146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r + T+eE+ l+ +++ ++G++ W++Ia+ ++ gRt++++k++w++
  PSME_00053156-RA  75 RSKITAEEERLITELHDRWGNK-WSRIAESLP-GRTDNEIKNYWRT 118
                       6678******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0981769IPR017930Myb domain
SuperFamilySSF466899.73E-3021116IPR009057Homeodomain-like
SMARTSM007172.9E-142171IPR001005SANT/Myb domain
PfamPF002493.6E-142269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-232376IPR009057Homeodomain-like
CDDcd001676.46E-102469No hitNo description
PROSITE profilePS5129424.19270124IPR017930Myb domain
SMARTSM007173.4E-1374122IPR001005SANT/Myb domain
PfamPF002494.0E-1376118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-2377124IPR009057Homeodomain-like
CDDcd001675.17E-1079118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MAKRTWWGDS AVDNREETAT RKGPWTVEED LQLTSYISLH GQGRWSFLAK AAGLNRTGRS  60
CRLRWINYLR PDLKRSKITA EEERLITELH DRWGNKWSRI AESLPGRTDN EIKNYWRTRI  120
KKKLGLQDNG SSSIDEDNRV EFERSTDFYC LTKGPPDLDA AEPTSFPTEV TEEIAVQTNR  180
SPYLQNDILP QQIPASKVNY EYGLHEKIHG KEVVNDGQPR AVLQEHLEVS DDLFGKRSPY  240
NFSVDSLGIL LSSGADGGTQ YGTIPPSPQA FSDSESNLNC YWDVLWNHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26221247108B-MYB
1gv2_A1e-26221244105MYB PROTO-ONCOGENE PROTEIN
1h88_C4e-262212458159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-262212458159MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-262212427128MYB TRANSFORMING PROTEIN
1mse_C1e-26221244105C-Myb DNA-Binding Domain
1msf_C1e-26221244105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotP813913e-52MYB05_ANTMA; Myb-related protein 305
STRINGEOY024211e-52(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.13e-53myb domain protein 112
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]