PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00053086-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB_related

Protein Properties

Length: 349aa MW: 39251.1 Da PI: 5.493

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00053086-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24	9.2e-08	4	26	23	46
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 +W+ Ia+ ++ gRt++++k++w++ PSME_00053086-RA 4 RWSQIAANLP-GRTDNEIKNYWNS 26 4*******.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.778	1	32	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-11	3	32	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.4E-7	3	36	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-5	4	26	IPR001005	SANT/Myb domain
CDD	cd00167	7.00E-6	4	25	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MISRWSQIAA NLPGRTDNEI KNYWNSSMKK KLRLKDHRPS SSTIAANGDT NHDAVTSCHY 60 VQPCLELLVP EEGYHPQNST FNILVSTRDN QLCAEDVLEL KQEQAQNQND EFLVYPNPTN 120 NQRMYSSQLL NNAYSTHTHE SFSTHAAFMS PSLQAQVLHN DNAAKSSTCD ELIIESWRAT 180 VPPHEAPRSA FNYSLGSTGI TIPALVERQP LIKKIENDDH INQNEIMIDH SCFTASSGIS 240 EWGAGHSYSN VAADFTDVYP GIFYTSHDND LFEIRTQEDH AKSHKSYQLS QIEGGKEGHG 300 DQLDRSRISN QEGKAKPVRE CRSRQVAVWA QDDLSNFNTA AASDFFDQM

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MISRWSQIAA NLPGRTDNEI KNYWNSSMKK KLRLKDHRPS SSTIAANGDT NHDAVTSCHY  60
VQPCLELLVP EEGYHPQNST FNILVSTRDN QLCAEDVLEL KQEQAQNQND EFLVYPNPTN  120
NQRMYSSQLL NNAYSTHTHE SFSTHAAFMS PSLQAQVLHN DNAAKSSTCD ELIIESWRAT  180
VPPHEAPRSA FNYSLGSTGI TIPALVERQP LIKKIENDDH INQNEIMIDH SCFTASSGIS  240
EWGAGHSYSN VAADFTDVYP GIFYTSHDND LFEIRTQEDH AKSHKSYQLS QIEGGKEGHG  300
DQLDRSRISN QEGKAKPVRE CRSRQVAVWA QDDLSNFNTA AASDFFDQM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01680.3	3e-13	myb domain protein 55