PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00053072-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LSD | ||||||||
Protein Properties | Length: 152aa MW: 16858.7 Da PI: 9.2291 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 38.8 | 1.5e-12 | 6 | 30 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg Crt L+Y+rGA+sV+C++C tV PSME_00053072-RA 6 CGRCRTFLMYTRGATSVQCSCCSTV 30 ***********************99 PP | |||||||
2 | zf-LSD1 | 43.3 | 6.1e-14 | 44 | 68 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +C t+L+YP+GAps++CalC++V PSME_00053072-RA 44 CRNCFTTLMYPYGAPSIKCALCHFV 68 99*********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 9.1E-14 | 3 | 32 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.9E-11 | 6 | 30 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.1E-10 | 41 | 71 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.5E-13 | 44 | 68 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MAQLICGRCR TFLMYTRGAT SVQCSCCSTV NLAIEANQVA HVNCRNCFTT LMYPYGAPSI 60 KCALCHFVTN VGQISNMRMI LPAQRPPAAA TMAPASSLAH PTRSQMQTMV VENPMTVDER 120 GKMVSNVGTA RKYWFLNLSQ RLKQIDSFKE IN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT071760 | 1e-139 | BT071760.1 Picea sitchensis clone WS0452_N14 unknown mRNA. | |||
GenBank | EF084706 | 1e-139 | EF084706.1 Picea sitchensis clone WS02727_J11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008225697.1 | 3e-55 | PREDICTED: protein LSD1 | ||||
Swissprot | Q6ASS2 | 4e-44 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | A9NTQ6 | 3e-63 | A9NTQ6_PICSI; Uncharacterized protein | ||||
STRING | XP_008225697.1 | 1e-54 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.6 | 2e-36 | LSD family protein |
Publications ? help Back to Top | |||
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