PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00053030-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 104aa MW: 12005.9 Da PI: 10.6256 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82 | 3.8e-26 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 i n s r+ tf kR+ g+lKKA+ELSvLCdaeva+iifs+tgk+ye++s PSME_00053030-RA 10 LIRNPSSRHATFYKRKSGLLKKAFELSVLCDAEVALIIFSETGKIYEFAS 59 699*********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.9E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.371 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.45E-29 | 2 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.2E-24 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
MGKKKLELKL IRNPSSRHAT FYKRKSGLLK KAFELSVLCD AEVALIIFSE TGKIYEFASQ 60 NDITRILAKY KERARNATPT SLQNTEEENS KLSSKWHWIR SKTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-21 | 1 | 72 | 1 | 71 | MEF2C |
5f28_B | 4e-21 | 1 | 72 | 1 | 71 | MEF2C |
5f28_C | 4e-21 | 1 | 72 | 1 | 71 | MEF2C |
5f28_D | 4e-21 | 1 | 72 | 1 | 71 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:9339904, ECO:0000269|Ref.9}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF087627 | 2e-75 | EF087627.1 Picea sitchensis clone WS02731_B04 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028959657.1 | 9e-27 | MADS-box transcription factor 23-like isoform X4 | ||||
Swissprot | Q9SAR1 | 9e-27 | MADS8_ORYSJ; MADS-box transcription factor 8 | ||||
TrEMBL | A9P1V3 | 8e-42 | A9P1V3_PICSI; Uncharacterized protein | ||||
STRING | MLOC_56472.2 | 2e-26 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.3 | 6e-27 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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